BLASTX nr result
ID: Coptis25_contig00015981
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00015981
(600 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera] 271 9e-90
ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi... 271 1e-89
emb|CBI24272.3| unnamed protein product [Vitis vinifera] 271 1e-89
gb|ABR17838.1| unknown [Picea sitchensis] 186 3e-57
gb|ABK26521.1| unknown [Picea sitchensis] 186 3e-55
>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 271 bits (694), Expect(2) = 9e-90
Identities = 125/155 (80%), Positives = 141/155 (90%)
Frame = +3
Query: 135 IYFCLRSSELKPNHFTFTNLLAACSHSGLIDEGWKYFEMMKSEYARGPAIEQYACMVDLL 314
++ R+ LKPNH TFTNLL+ACSHSGLI+EGWKYF+MMK+EYA PA+EQYACMVDLL
Sbjct: 688 LFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLL 747
Query: 315 ARAGQFDESLEFIKEMPFEPNAAVWGSLLGACRIHCNPELAEYAAGYLFELEPMYSGNYI 494
+RAGQF+E+LEFI++MPFEPNAAVWGSLLGACRIHCNP+LAEYAA YLFELEP SGNY+
Sbjct: 748 SRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYV 807
Query: 495 LLANIYSAAGRWGDAAMIRRLMKERGVTKPPGCSW 599
L+ANIYSAAGRW DAA IR LMKERGVTKPPGCSW
Sbjct: 808 LMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSW 842
Score = 84.7 bits (208), Expect(2) = 9e-90
Identities = 36/47 (76%), Positives = 43/47 (91%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLF 142
DMY RCG I+K+RR+FDL+P+RD+VSWN MI+ YGMHGFGMDAVNLF
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 689
>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 271 bits (693), Expect(2) = 1e-89
Identities = 125/150 (83%), Positives = 139/150 (92%)
Frame = +3
Query: 150 RSSELKPNHFTFTNLLAACSHSGLIDEGWKYFEMMKSEYARGPAIEQYACMVDLLARAGQ 329
R+ LKPNH TFTNLL+ACSHSGLI+EGWKYF+MMK+EYA PA+EQYACMVDLL+RAGQ
Sbjct: 693 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752
Query: 330 FDESLEFIKEMPFEPNAAVWGSLLGACRIHCNPELAEYAAGYLFELEPMYSGNYILLANI 509
F+E+LEFI++MPFEPNAAVWGSLLGACRIHCNP+LAEYAA YLFELEP SGNY+L+ANI
Sbjct: 753 FNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANI 812
Query: 510 YSAAGRWGDAAMIRRLMKERGVTKPPGCSW 599
YSAAGRW DAA IR LMKERGVTKPPGCSW
Sbjct: 813 YSAAGRWEDAAKIRCLMKERGVTKPPGCSW 842
Score = 84.7 bits (208), Expect(2) = 1e-89
Identities = 36/47 (76%), Positives = 43/47 (91%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLF 142
DMY RCG I+K+RR+FDL+P+RD+VSWN MI+ YGMHGFGMDAVNLF
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 689
>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 271 bits (693), Expect(2) = 1e-89
Identities = 125/150 (83%), Positives = 139/150 (92%)
Frame = +3
Query: 150 RSSELKPNHFTFTNLLAACSHSGLIDEGWKYFEMMKSEYARGPAIEQYACMVDLLARAGQ 329
R+ LKPNH TFTNLL+ACSHSGLI+EGWKYF+MMK+EYA PA+EQYACMVDLL+RAGQ
Sbjct: 450 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 509
Query: 330 FDESLEFIKEMPFEPNAAVWGSLLGACRIHCNPELAEYAAGYLFELEPMYSGNYILLANI 509
F+E+LEFI++MPFEPNAAVWGSLLGACRIHCNP+LAEYAA YLFELEP SGNY+L+ANI
Sbjct: 510 FNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANI 569
Query: 510 YSAAGRWGDAAMIRRLMKERGVTKPPGCSW 599
YSAAGRW DAA IR LMKERGVTKPPGCSW
Sbjct: 570 YSAAGRWEDAAKIRCLMKERGVTKPPGCSW 599
Score = 84.7 bits (208), Expect(2) = 1e-89
Identities = 36/47 (76%), Positives = 43/47 (91%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLF 142
DMY RCG I+K+RR+FDL+P+RD+VSWN MI+ YGMHGFGMDAVNLF
Sbjct: 400 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446
>gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 186 bits (472), Expect(2) = 3e-57
Identities = 85/150 (56%), Positives = 111/150 (74%)
Frame = +3
Query: 147 LRSSELKPNHFTFTNLLAACSHSGLIDEGWKYFEMMKSEYARGPAIEQYACMVDLLARAG 326
++ + K +H FT +L ACSH+GL+D+G +YF+ MKS+Y P +E YAC+VDLL RAG
Sbjct: 515 MQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAG 574
Query: 327 QFDESLEFIKEMPFEPNAAVWGSLLGACRIHCNPELAEYAAGYLFELEPMYSGNYILLAN 506
DE+ IK M EP+A VWG+LLGACRIHCN EL E AA +LFEL+P +G Y+LL+N
Sbjct: 575 HLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSN 634
Query: 507 IYSAAGRWGDAAMIRRLMKERGVTKPPGCS 596
IY+ A RW D A +R++MKE+GV K PGCS
Sbjct: 635 IYAEAQRWEDVAKLRKMMKEKGVKKQPGCS 664
Score = 61.6 bits (148), Expect(2) = 3e-57
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLF 142
D+Y +CG + A+++F+ +PE+D+VSW TMI YG+HG G DA+ LF
Sbjct: 466 DIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALF 512
Score = 58.2 bits (139), Expect(2) = 2e-09
Identities = 24/46 (52%), Positives = 35/46 (76%)
Frame = +2
Query: 5 MYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLF 142
MY +CG ++ AR+VFD +P+RD+VSWN +IAGY +G +A+ LF
Sbjct: 164 MYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALF 209
Score = 28.9 bits (63), Expect(2) = 2e-09
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +3
Query: 162 LKPNHFTFTNLLAACSHSGLIDEGWKYFEMMKSEYARGPAIEQYAC----MVDLLARAGQ 329
+KPN T +++ C+H +++G + YA IE +V++ A+ G
Sbjct: 217 IKPNSSTLVSVMPVCAHLLALEQGKQI-----HCYAIRSGIESDVLVVNGLVNMYAKCGN 271
Query: 330 FDESLEFIKEMPFEPNAAVWGSLLG 404
+ + + + MP + A W +++G
Sbjct: 272 VNTAHKLFERMPIR-DVASWNAIIG 295
Score = 51.6 bits (122), Expect(2) = 5e-09
Identities = 18/48 (37%), Positives = 35/48 (72%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLFL 145
+MY +CG + A ++F+ +P++++V+WN +I+GY HG +A+ LF+
Sbjct: 365 NMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFI 412
Score = 34.3 bits (77), Expect(2) = 5e-09
Identities = 21/100 (21%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 135 IYFCLRSSELKPNHFTFTNLLAACSHSGLIDEGWK-YFEMMKSEYARGPAIEQYACMVDL 311
++ +++ +KP+ F ++L AC+H +++G + + ++S + + +VD+
Sbjct: 410 LFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG--TGLVDI 467
Query: 312 LARAGQFDESLEFIKEMPFEPNAAVWGSLLGACRIHCNPE 431
A+ G + + + + MP E + W +++ A IH + E
Sbjct: 468 YAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGE 506
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLF 142
+MY +CG + A ++F+ +P RD+ SWN +I GY ++ +A+ F
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFF 310
Score = 37.4 bits (85), Expect(2) = 4e-08
Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 162 LKPNHFTFTNLLAACSHSGLIDEGWK-YFEMMKSEYARGPAIEQYACMVDLLARAGQFDE 338
+KPN T ++L AC+H +++G + + ++S + + +V++ A+ G +
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN--ALVNMYAKCGNVNS 375
Query: 339 SLEFIKEMPFEPNAAVWGSLLGACRIHCNPELA 437
+ + + MP + N W +++ H +P A
Sbjct: 376 AYKLFERMP-KKNVVAWNAIISGYSQHGHPHEA 407
>gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 186 bits (473), Expect(2) = 3e-55
Identities = 85/146 (58%), Positives = 105/146 (71%)
Frame = +3
Query: 162 LKPNHFTFTNLLAACSHSGLIDEGWKYFEMMKSEYARGPAIEQYACMVDLLARAGQFDES 341
+KPN TF +L+ CSH+GL+DEG YF+ M ++ P E Y+CMVDL RAG DE+
Sbjct: 95 VKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEA 154
Query: 342 LEFIKEMPFEPNAAVWGSLLGACRIHCNPELAEYAAGYLFELEPMYSGNYILLANIYSAA 521
L FI +MP EPNA+VWGSLLGACR+H N ELAE A L EL P G Y+LL+NIY+AA
Sbjct: 155 LNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAA 214
Query: 522 GRWGDAAMIRRLMKERGVTKPPGCSW 599
GRW DA +R++MK+R V K PGCSW
Sbjct: 215 GRWDDAGKVRKMMKDRSVKKEPGCSW 240
Score = 54.7 bits (130), Expect(2) = 3e-55
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +2
Query: 2 DMYRRCGLIKKARRVFDLIPERDIVSWNTMIAGYGMHGFGMDAVNLFLFEII*TEAKP 175
DMY +CG I+ A+ VF + E D+ SWN MI+G HG G +AV LF +++ T KP
Sbjct: 41 DMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLF-EQMLQTGVKP 97