BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015936
         (924 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-li...   313   5e-83
emb|CBI20795.3| unnamed protein product [Vitis vinifera]              309   7e-82
ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu...   303   3e-80
sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related prote...   303   5e-80
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul...   300   2e-79

>ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-like [Vitis vinifera]
           gi|254789791|sp|A7P514.1|RBR_VITVI RecName:
           Full=Retinoblastoma-related protein
           gi|359392418|gb|AEV45768.1| RBR protein [Vitis
           pseudoreticulata]
          Length = 1007

 Score =  313 bits (801), Expect = 5e-83
 Identities = 156/252 (61%), Positives = 189/252 (75%), Gaps = 9/252 (3%)
 Frame = -3

Query: 730 ADESDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXGPPEEIERYW 551
           A++  AVEARF + CK+GL LDE    QAMKLF+E               G PE+ ERYW
Sbjct: 10  AEQGGAVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGVPEDSERYW 69

Query: 550 FAFIIYCVKRLSDGNNAEI---------TLFQILKITKLNIVDFFKEMPQFLLKAGLVLN 398
           FAFI+Y VKRLS+G    +          L QIL+++KLNIVDFFKE+PQF++K G +L 
Sbjct: 70  FAFILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILG 129

Query: 397 KIYGLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVAD 218
            +YG DWEKRLEAKELQANFVH+S+LSKYYK  Y E F TS  + +K + + S +GYV+D
Sbjct: 130 NLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSD 189

Query: 217 YHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKG 38
           YHRFGWLLFLALR+HAFSRFKDLVTCTNGLVSILAILILHVP+ FR+F I + PRFV+KG
Sbjct: 190 YHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKG 249

Query: 37  SKGVDLLASLCN 2
           +KG+DLLASLC+
Sbjct: 250 NKGMDLLASLCD 261


>emb|CBI20795.3| unnamed protein product [Vitis vinifera]
          Length = 1006

 Score =  309 bits (791), Expect = 7e-82
 Identities = 156/252 (61%), Positives = 189/252 (75%), Gaps = 9/252 (3%)
 Frame = -3

Query: 730 ADESDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXGPPEEIERYW 551
           A++  AVEARF + CK+GL LDE    QAMKLF+E               GP E+ ERYW
Sbjct: 10  AEQGGAVEARFTEFCKNGLQLDESTFAQAMKLFEESNHLLSTTSLSAIGNGP-EDSERYW 68

Query: 550 FAFIIYCVKRLSDGNNAEI---------TLFQILKITKLNIVDFFKEMPQFLLKAGLVLN 398
           FAFI+Y VKRLS+G    +          L QIL+++KLNIVDFFKE+PQF++K G +L 
Sbjct: 69  FAFILYSVKRLSEGTAENVQQGNDENGFNLCQILRVSKLNIVDFFKELPQFIVKVGPILG 128

Query: 397 KIYGLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVAD 218
            +YG DWEKRLEAKELQANFVH+S+LSKYYK  Y E F TS  + +K + + S +GYV+D
Sbjct: 129 NLYGPDWEKRLEAKELQANFVHLSILSKYYKRAYLEFFSTSGSNLDKQSSVISASGYVSD 188

Query: 217 YHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKG 38
           YHRFGWLLFLALR+HAFSRFKDLVTCTNGLVSILAILILHVP+ FR+F I + PRFV+KG
Sbjct: 189 YHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPISFRSFTINNYPRFVKKG 248

Query: 37  SKGVDLLASLCN 2
           +KG+DLLASLC+
Sbjct: 249 NKGMDLLASLCD 260


>ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]
           gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName:
           Full=Retinoblastoma-related protein
           gi|222844988|gb|EEE82535.1| hypothetical protein
           POPTRDRAFT_547794 [Populus trichocarpa]
          Length = 1035

 Score =  303 bits (777), Expect = 3e-80
 Identities = 154/249 (61%), Positives = 182/249 (73%), Gaps = 9/249 (3%)
 Frame = -3

Query: 721 SDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXGPPEEIERYWFAF 542
           SDAVE RF   CKSGL LDE    QA+KLFK+                  EE ER+WFAF
Sbjct: 34  SDAVEVRFSDFCKSGLALDENTCTQAIKLFKDTKHLLMTNVSSIGNGTS-EEAERFWFAF 92

Query: 541 IIYCVKRLSDGNNAE---------ITLFQILKITKLNIVDFFKEMPQFLLKAGLVLNKIY 389
           + Y VKRLS+ N  +         +TL QIL++ KLNIVDFFKE+P F++KAG +L+ IY
Sbjct: 93  VSYSVKRLSEKNRDDAQQKSDDPGLTLCQILRLAKLNIVDFFKELPHFIVKAGPILSNIY 152

Query: 388 GLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVADYHR 209
           G DWE RLEAKELQANFVH+S+LS++YK   +ELFLTSD   +K   IS+   +V+D+HR
Sbjct: 153 GADWENRLEAKELQANFVHLSILSRHYKRACRELFLTSDASSDKQPAISNEATHVSDHHR 212

Query: 208 FGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKGSKG 29
           FGWLLFLALR+HAFSRFKDLVTCTNGLVS+LA+LI+HVPVRFRNF   DS  FVRKG KG
Sbjct: 213 FGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLIIHVPVRFRNFSFNDSQWFVRKGDKG 272

Query: 28  VDLLASLCN 2
           VDLLASLCN
Sbjct: 273 VDLLASLCN 281


>sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related protein
           gi|89111303|dbj|BAE80326.1| retinoblastoma related
           protein [Camellia sinensis]
          Length = 1025

 Score =  303 bits (775), Expect = 5e-80
 Identities = 153/247 (61%), Positives = 183/247 (74%), Gaps = 9/247 (3%)
 Frame = -3

Query: 715 AVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXGPPEEIERYWFAFII 536
           +++ARF   CK+GL L+E    +AMKLF E                P EE ERYWFAF++
Sbjct: 26  SLDARFAYFCKTGLSLNENTYTEAMKLFSESKHLLSTTISAIGTGTP-EEAERYWFAFVL 84

Query: 535 YCVKRLSDGNNAE---------ITLFQILKITKLNIVDFFKEMPQFLLKAGLVLNKIYGL 383
           Y VKRLS+ N  +          TL QIL++ KLNIVDFFKE+PQF++KAG +L+  YG 
Sbjct: 85  YSVKRLSEANADDSSQGTGGDGFTLCQILRVAKLNIVDFFKELPQFIVKAGPILSNQYGT 144

Query: 382 DWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVADYHRFG 203
           DWEKRLEAKELQANFVH+S+LSKYYK  ++E FLTSD    + +  +  +GYV+DYHRFG
Sbjct: 145 DWEKRLEAKELQANFVHLSLLSKYYKRAFREFFLTSDAKVGEQSTAAIASGYVSDYHRFG 204

Query: 202 WLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKGSKGVD 23
           WLLFLALR HAFSRFKDLVTCTNGLV+ILAILI+H+PVR RNF + DSPRFV KGSKGVD
Sbjct: 205 WLLFLALRTHAFSRFKDLVTCTNGLVAILAILIIHIPVRVRNFNLHDSPRFVMKGSKGVD 264

Query: 22  LLASLCN 2
           LLASLCN
Sbjct: 265 LLASLCN 271


>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
           tremuloides]
          Length = 1035

 Score =  300 bits (769), Expect = 2e-79
 Identities = 153/249 (61%), Positives = 181/249 (72%), Gaps = 9/249 (3%)
 Frame = -3

Query: 721 SDAVEARFQQLCKSGLLLDEGMLLQAMKLFKEXXXXXXXXXXXXXXXGPPEEIERYWFAF 542
           SDAVE RF   CKSGL LDE    QA+KLFK+                  EE ER+WFAF
Sbjct: 34  SDAVEVRFSDFCKSGLALDENTCTQAIKLFKDTKHLLMTNVSSIGNGTS-EEAERFWFAF 92

Query: 541 IIYCVKRLSDGNNAE---------ITLFQILKITKLNIVDFFKEMPQFLLKAGLVLNKIY 389
           + Y VKRLS+ N  +         +TL QIL++ KLNIVDFFKE+P F++KAG +L+ IY
Sbjct: 93  VSYSVKRLSEKNRDDAQQKSDDPGLTLCQILRLAKLNIVDFFKELPHFIVKAGPILSNIY 152

Query: 388 GLDWEKRLEAKELQANFVHMSVLSKYYKHVYQELFLTSDRDDEKMTVISSTTGYVADYHR 209
           G DWE RLEAKELQANFVH+S+LS++YK   +ELFLTSD   +K   IS+   +V+D+HR
Sbjct: 153 GADWENRLEAKELQANFVHLSILSRHYKRACRELFLTSDASSDKQPAISNEATHVSDHHR 212

Query: 208 FGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFCIRDSPRFVRKGSKG 29
           FGWLLFLALR+HAFSRFKDLVTCTNGLVS+LA+LI+HVPV FRNF   DS  FVRKG KG
Sbjct: 213 FGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLIIHVPVCFRNFSFNDSQWFVRKGDKG 272

Query: 28  VDLLASLCN 2
           VDLLASLCN
Sbjct: 273 VDLLASLCN 281