BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015889
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39303.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,...   104   9e-21
ref|XP_002882856.1| pentatricopeptide repeat-containing protein ...    98   8e-19
ref|NP_188004.1| pentatricopeptide repeat-containing protein [Ar...    97   1e-18

>emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  119 bits (297), Expect = 3e-25
 Identities = 59/86 (68%), Positives = 73/86 (84%)
 Frame = +2

Query: 5   EFGRVVHGCAVKLGLDFDVVVGTALLDMYAKNGGLENAIKIFKLMPDRNVVMFNAMIAGF 184
           E G+++HGCAVKLGLD DVVVGTALLD YAK G LE+A KIFKLMPD NVVM+NAMIAGF
Sbjct: 161 ECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGF 220

Query: 185 FQSETEVSEEYADEALHLFSQMRKEG 262
            Q ET +++E+A+EA++LF +M+  G
Sbjct: 221 LQMET-MADEFANEAMYLFFEMQSRG 245


>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  119 bits (297), Expect = 3e-25
 Identities = 59/86 (68%), Positives = 73/86 (84%)
 Frame = +2

Query: 5   EFGRVVHGCAVKLGLDFDVVVGTALLDMYAKNGGLENAIKIFKLMPDRNVVMFNAMIAGF 184
           E G+++HGCAVKLGLD DVVVGTALLD YAK G LE+A KIFKLMPD NVVM+NAMIAGF
Sbjct: 240 ECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGF 299

Query: 185 FQSETEVSEEYADEALHLFSQMRKEG 262
            Q ET +++E+A+EA++LF +M+  G
Sbjct: 300 LQMET-MADEFANEAMYLFFEMQSRG 324


>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 793

 Score =  104 bits (259), Expect = 9e-21
 Identities = 51/85 (60%), Positives = 69/85 (81%)
 Frame = +2

Query: 8   FGRVVHGCAVKLGLDFDVVVGTALLDMYAKNGGLENAIKIFKLMPDRNVVMFNAMIAGFF 187
           +G+ +HG  VK GLD D+VVGTALLDMYAK G L +AI++F+  P++NVVM+NAMIAGF 
Sbjct: 231 YGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFI 290

Query: 188 QSETEVSEEYADEALHLFSQMRKEG 262
           Q+E ++ +E A EAL LFSQM+++G
Sbjct: 291 QTE-DIDKECAYEALKLFSQMQRQG 314


>ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328696|gb|EFH59115.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 753

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 47/86 (54%), Positives = 65/86 (75%)
 Frame = +2

Query: 5   EFGRVVHGCAVKLGLDFDVVVGTALLDMYAKNGGLENAIKIFKLMPDRNVVMFNAMIAGF 184
           E G  +H  A KLG++FD+VV TALLDMYAKNG L+ AIK+F LMP +NVV +NAMI+GF
Sbjct: 270 EKGMAIHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGF 329

Query: 185 FQSETEVSEEYADEALHLFSQMRKEG 262
            Q + ++++E + EA  LF +M++ G
Sbjct: 330 LQMD-DITDEASSEAFKLFMEMQRRG 354


>ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g13880 gi|9294611|dbj|BAB02912.1| probable
           selenium-binding protein [Arabidopsis thaliana]
           gi|332641909|gb|AEE75430.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/86 (54%), Positives = 63/86 (73%)
 Frame = +2

Query: 5   EFGRVVHGCAVKLGLDFDVVVGTALLDMYAKNGGLENAIKIFKLMPDRNVVMFNAMIAGF 184
           E G  +H    KLG++FD+VV TALLDMYAKNG L+ AIK+F LMP +NVV +NAMI+GF
Sbjct: 269 EKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGF 328

Query: 185 FQSETEVSEEYADEALHLFSQMRKEG 262
            Q + E+++E + EA  LF  M++ G
Sbjct: 329 LQMD-EITDEASSEAFKLFMDMQRRG 353