BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015854
         (1156 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ri...   272   1e-70
ref|XP_002314019.1| predicted protein [Populus trichocarpa] gi|2...   272   1e-70
gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]      271   2e-70
ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloropl...   267   3e-69
ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloropl...   262   1e-67

>ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223547691|gb|EEF49184.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 256

 Score =  272 bits (696), Expect = 1e-70
 Identities = 154/261 (59%), Positives = 183/261 (70%), Gaps = 7/261 (2%)
 Frame = +2

Query: 56  MATISYFSTSNLLTQPKNSFNIQVLSSKPSLQLSKHTFLRNGLSVSPF-----FFNHKES 220
           MATIS  ++   +      F +     KP+  + K T   + ++ S F       N +  
Sbjct: 1   MATISSLAS---ILPTSTKFTLFTNLPKPTFLILKPT--THFINFSKFSHLDVVLNPRVP 55

Query: 221 SRVSAVAEETS--VSTQDPSSEVARRLYVGNIPRNVGNDELKKIFEEHGAVEKAEVMYDK 394
            R+ AVAEE +      DPSSE A+RLY+GNIPR V NDEL KI EEHGAVEKAEVMYDK
Sbjct: 56  RRLFAVAEEAAPVAPPPDPSSEAAKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDK 115

Query: 395 YSKRSRRFAFVAMKTIEDANAAVEKLNGTEIGGRTIKVNITEKPLSSVDTSLLQAEESEF 574
           YS RSRRFAFV M+T+EDANA +EKLNGT+IGGR IKVNITEKPL+S D S LQ EES+F
Sbjct: 116 YSGRSRRFAFVTMRTVEDANAVIEKLNGTQIGGREIKVNITEKPLASGDLSFLQLEESQF 175

Query: 575 VDSPYKVYVGNLAKTVTSDMLSKFFSEKGKVLGARISRVPXXXXXXXXXXXXXXXDEDVE 754
           VDSP+KVYVGNLAKTVTS++L  FFSEKGKVL A++SRVP               +EDVE
Sbjct: 176 VDSPHKVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVE 235

Query: 755 ASISSLNNAVLEGQKIRVNKA 817
           A+ISS NN++LEGQKIRVNKA
Sbjct: 236 AAISSFNNSLLEGQKIRVNKA 256


>ref|XP_002314019.1| predicted protein [Populus trichocarpa] gi|222850427|gb|EEE87974.1|
           predicted protein [Populus trichocarpa]
          Length = 255

 Score =  272 bits (696), Expect = 1e-70
 Identities = 159/261 (60%), Positives = 182/261 (69%), Gaps = 7/261 (2%)
 Frame = +2

Query: 56  MATISYFSTSNLLTQPKNSFNIQVLSSKPSLQLSKHTFLRNGLSVSPFF------FNHKE 217
           MATIS  +T  L T  K + +     SKPS Q+ K     N  +  P F       N K 
Sbjct: 1   MATISSLTTP-LPTSTKLALSRN--QSKPSFQILKPA---NPFNHFPKFTHLHKILNTKA 54

Query: 218 SSRVSAVAEETS-VSTQDPSSEVARRLYVGNIPRNVGNDELKKIFEEHGAVEKAEVMYDK 394
             R+ AVAEET+  +  DPSSE ARRLYVGNIPR + N+EL KI EEHGAVEKAEVMYDK
Sbjct: 55  PQRLFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 114

Query: 395 YSKRSRRFAFVAMKTIEDANAAVEKLNGTEIGGRTIKVNITEKPLSSVDTSLLQAEESEF 574
           YS RSRRFAFV MKT EDANAA+EKLNGTEIGGR IKVNITEKPL S+D   LQ++ES+F
Sbjct: 115 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDESQF 174

Query: 575 VDSPYKVYVGNLAKTVTSDMLSKFFSEKGKVLGARISRVPXXXXXXXXXXXXXXXDEDVE 754
           VDSPYKVYVGNLAKTV +D L  FFS+KG VL A++SRVP               +EDVE
Sbjct: 175 VDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVE 234

Query: 755 ASISSLNNAVLEGQKIRVNKA 817
            +ISS NN++LEGQ IRVNKA
Sbjct: 235 VAISSFNNSLLEGQPIRVNKA 255


>gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 255

 Score =  271 bits (693), Expect = 2e-70
 Identities = 158/261 (60%), Positives = 182/261 (69%), Gaps = 7/261 (2%)
 Frame = +2

Query: 56  MATISYFSTSNLLTQPKNSFNIQVLSSKPSLQLSKHTFLRNGLSVSPFF------FNHKE 217
           MATIS  +T  L T  K + +     SKPS Q+ K     N  +  P F       N K 
Sbjct: 1   MATISSLTTP-LPTSTKLALSRN--QSKPSFQILKPA---NPFNHFPKFTHLHKILNTKA 54

Query: 218 SSRVSAVAEETS-VSTQDPSSEVARRLYVGNIPRNVGNDELKKIFEEHGAVEKAEVMYDK 394
             R+ AVAEET+  +  DPSSE ARRLYVGNIPR + N+EL KI EEHGAVEKAEVMYDK
Sbjct: 55  PQRLFAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 114

Query: 395 YSKRSRRFAFVAMKTIEDANAAVEKLNGTEIGGRTIKVNITEKPLSSVDTSLLQAEESEF 574
           YS RSRRFAFV MKT EDANAA+EKLNGTEIGGR IKVNITEKPL S+D   LQ++E++F
Sbjct: 115 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDETQF 174

Query: 575 VDSPYKVYVGNLAKTVTSDMLSKFFSEKGKVLGARISRVPXXXXXXXXXXXXXXXDEDVE 754
           VDSPYKVYVGNLAKTV +D L  FFS+KG VL A++SRVP               +EDVE
Sbjct: 175 VDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVE 234

Query: 755 ASISSLNNAVLEGQKIRVNKA 817
            +ISS NN++LEGQ IRVNKA
Sbjct: 235 VAISSFNNSLLEGQPIRVNKA 255


>ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
           gi|297736206|emb|CBI24844.3| unnamed protein product
           [Vitis vinifera]
          Length = 247

 Score =  267 bits (683), Expect = 3e-69
 Identities = 153/255 (60%), Positives = 180/255 (70%), Gaps = 1/255 (0%)
 Frame = +2

Query: 56  MATISYFSTSNLLTQPKNSFNIQVLSSKPSLQLSKHTFLRNGLSVSPFFFNHKESSRVSA 235
           MA IS   +  LL  P  +     L SKPS+Q  K     N ++        K    VSA
Sbjct: 1   MAAISSLFSQTLLHHPTKTLT---LHSKPSIQPLKPFHFLNSVTFKAI--KPKRPIAVSA 55

Query: 236 VAEETSVSTQDPSSEVARRLYVGNIPRNVGNDELKKIFEEHGAVEKAEVMYDKYSKRSRR 415
           V  E  V+T D +   ARRLYVGNIPR + + EL +I EEHGAVEKAEVMYDKYS RSRR
Sbjct: 56  VTAEAPVATSDVA---ARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRR 112

Query: 416 FAFVAMKTIEDANAAVEKLNGTEIGGRTIKVNITEKPLSSVDTSLLQAEESEFVDSPYKV 595
           FAFV MKT+EDANAA+EKLNGTEIGGR IKVNITEKPL ++D SLLQAEES+F+DSP+KV
Sbjct: 113 FAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLLTLDMSLLQAEESQFIDSPHKV 172

Query: 596 YVGNLAKTVTSDMLSKFFSEK-GKVLGARISRVPXXXXXXXXXXXXXXXDEDVEASISSL 772
           YVGNLA+TVT+D L++FFSEK GKVL A++SRVP               +EDVEA+ISS 
Sbjct: 173 YVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSC 232

Query: 773 NNAVLEGQKIRVNKA 817
           NNA L+GQ+IRVNKA
Sbjct: 233 NNAFLDGQRIRVNKA 247


>ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
           max]
          Length = 246

 Score =  262 bits (669), Expect = 1e-67
 Identities = 147/244 (60%), Positives = 175/244 (71%), Gaps = 2/244 (0%)
 Frame = +2

Query: 92  LTQPKNSFNIQVLSSKPSLQLSKHTFLRNGLSVSPFFFNHKESSR--VSAVAEETSVSTQ 265
           LT P +S    + +++PS      T LR  L  +      + S R   +AVAE+ + +T+
Sbjct: 17  LTTPSSSSTQILFTARPSA-----THLRPLLLTT-----RRRSGRRPFAAVAEQAATATE 66

Query: 266 DPSSEVARRLYVGNIPRNVGNDELKKIFEEHGAVEKAEVMYDKYSKRSRRFAFVAMKTIE 445
                 ARRLYVGNIPR V NDEL KI +EHGAVEKAEVMYDKYS RSRRFAFV MKT+E
Sbjct: 67  ----AAARRLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVE 122

Query: 446 DANAAVEKLNGTEIGGRTIKVNITEKPLSSVDTSLLQAEESEFVDSPYKVYVGNLAKTVT 625
           DA A +EKLNGTE+GGR IKVN+TEKPLS++D  LLQAEESEF+DSP+KVYVGNLAKTVT
Sbjct: 123 DATAVIEKLNGTELGGREIKVNVTEKPLSTLDLPLLQAEESEFIDSPHKVYVGNLAKTVT 182

Query: 626 SDMLSKFFSEKGKVLGARISRVPXXXXXXXXXXXXXXXDEDVEASISSLNNAVLEGQKIR 805
           +D L  FFSEKGKVL A++SRVP               +EDVEA+ISS NN++LEGQ IR
Sbjct: 183 TDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLLEGQTIR 242

Query: 806 VNKA 817
           VNKA
Sbjct: 243 VNKA 246