BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015840
         (1790 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              568   e-159
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   545   e-152
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              458   e-126
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2...   416   e-114
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...   410   e-112

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  568 bits (1463), Expect = e-159
 Identities = 307/533 (57%), Positives = 390/533 (73%), Gaps = 12/533 (2%)
 Frame = +3

Query: 15   MVVQNGIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIGYTELSSQQVKNCLLVLIQ 194
            M  Q G++LAV+LIS+HFG+LV KVC+CLLRKGTLTL   I +TEL  QQVK+C+LVLIQ
Sbjct: 1    MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 195  HNCVHAFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQG 374
            HNCV AF    + G  G  P+  TQY A+F NI+HRMRF KFLAIVSEELDKECEE+ +G
Sbjct: 61   HNCVQAFAIQQEVGF-GEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEG 119

Query: 375  LLQHGRLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERCYETVG-ISQADDK 551
            LLQHGRLT+EQI+ RA S ++EG   VQDA+R +F KLV AH+VERC  +   ++   ++
Sbjct: 120  LLQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEE 179

Query: 552  NSSTGKRGAKLAKFVEI-ETAEQRAMSAGVPSD--RFLFVPNTGIDATSEANASGKSFDV 722
             +   KRGAK AK VE  +T EQRA++A  P D  RF  + NTG D     N       V
Sbjct: 180  ETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN-------V 232

Query: 723  TVGEKRKVEALEMDERKKAMLCEKEVLWRANFEKFAFHLRQKACVATVRSQLDDGAAVTL 902
            T GEKRK +ALE+D+   A  CEK+VLWRANFE+F   LR KAC+A V+++LDDGAA+ L
Sbjct: 233  TAGEKRKQDALELDKETGAS-CEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVL 291

Query: 903  NAMIDSIKTGGEKV------PLS--SIYENVIKNGEGRNMTEAHVRAALDQIGCHCSRIG 1058
            +AM+++ ++  +KV      PLS  +I+E V+K+  GR+MT   VR +L Q+GC     G
Sbjct: 292  SAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRG 351

Query: 1059 TEESYSLDLKNIVEIAQNDEVESLVSKRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMEN 1238
              ESYS+DLKNI+E+AQNDEVES+  KRYGR AY +FRLLSK+ +L+ TDKI+DT  +E 
Sbjct: 352  AAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEK 411

Query: 1239 MEALKILYSLWKDDYVHMEKLVSHGSAQSQYLLWRVNKRTVREHVFDETCHAALNLRLKL 1418
             +  KILY LWKD+Y+ MEKL  HGS QSQ+LLW+V K T+  HV +E  H+ALNL L++
Sbjct: 412  KDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRV 471

Query: 1419 AYELEQEREIIQLPKDNRIGAQGKRFERSRQVNILLESSLMKLDEALMLFYDF 1577
            AYELEQE+EIIQLP++ R+GA G RFER R+V ILLESSLMKLD+A+MLF DF
Sbjct: 472  AYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  545 bits (1404), Expect = e-152
 Identities = 299/533 (56%), Positives = 381/533 (71%), Gaps = 12/533 (2%)
 Frame = +3

Query: 15   MVVQNGIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIGYTELSSQQVKNCLLVLIQ 194
            M  Q G++LAV+LIS+HFG+LV KVC+CLLRKGTLTL   I +TEL  QQVK+C+LVLIQ
Sbjct: 1    MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 195  HNCVHAFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQG 374
            HNCV AF    +       P+  TQY A+F NI+HRMRF KFLAIVSEELDKECEE+ +G
Sbjct: 61   HNCVQAFAIQQE------APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEG 114

Query: 375  LLQHGRLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERCYETVG-ISQADDK 551
            LLQHGRLT+EQI+ RA S + E    VQDA+R +F KLV AH+VERC  +   ++   ++
Sbjct: 115  LLQHGRLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEE 172

Query: 552  NSSTGKRGAKLAKFVEI-ETAEQRAMSAGVPSD--RFLFVPNTGIDATSEANASGKSFDV 722
             +   KRGAK AK VE  +T EQRA++A  P D  RF  + NTG D     N        
Sbjct: 173  ETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN-------- 224

Query: 723  TVGEKRKVEALEMDERKKAMLCEKEVLWRANFEKFAFHLRQKACVATVRSQLDDGAAVTL 902
                 RK +ALE+D+   A  CEK+VLWRANFE+F   LR KAC+A V+++LDDGAA+ L
Sbjct: 225  -----RKQDALELDKETGAS-CEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVL 278

Query: 903  NAMIDSIKTGGEKV------PLS--SIYENVIKNGEGRNMTEAHVRAALDQIGCHCSRIG 1058
            +AM+++ ++  +KV      PLS  +I+E V+K+  GR+MT   VR +L Q+GC     G
Sbjct: 279  SAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRG 338

Query: 1059 TEESYSLDLKNIVEIAQNDEVESLVSKRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMEN 1238
              ESYS+DLKNI+E+AQNDEVES+  KRYGR AY +FRLLSK+ +L+ TDKI+DT  +E 
Sbjct: 339  AAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEK 398

Query: 1239 MEALKILYSLWKDDYVHMEKLVSHGSAQSQYLLWRVNKRTVREHVFDETCHAALNLRLKL 1418
             +  KILY LWKD+Y+ MEKL  HGS QSQ+LLW+V K T+  HV +E  H+ALNL L++
Sbjct: 399  KDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRV 458

Query: 1419 AYELEQEREIIQLPKDNRIGAQGKRFERSRQVNILLESSLMKLDEALMLFYDF 1577
            AYELEQE+EIIQLP++ R+GA G RFER R+V ILLESSLMKLD+A+MLF DF
Sbjct: 459  AYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 511


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  458 bits (1179), Expect = e-126
 Identities = 258/533 (48%), Positives = 352/533 (66%), Gaps = 12/533 (2%)
 Frame = +3

Query: 15   MVVQNGIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIGYTELSSQQVKNCLLVLIQ 194
            M  + GIKLAV+LIST FGD   KVC+CLLRKGTL L + +   +LS QQVK  L VLIQ
Sbjct: 1    MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQ 60

Query: 195  HNCVHAFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQG 374
            HNCV AF   ++ G  G  P   TQY  +F+NI+HRMRFPK LAIVS+ELDKECEELF+ 
Sbjct: 61   HNCVQAFAMEHEGGC-GEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEA 119

Query: 375  LLQHGRLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERC-YETVGISQADDK 551
             L+HG LT++QI+ R  S +NEG C VQDA+R +F KLVNAHYVERC      +   D++
Sbjct: 120  FLKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEE 179

Query: 552  NSSTGKRGAKLAKFVE-IETAEQRAMSAGVPSDR--FLFVPNTGIDATSEANASGKSFDV 722
             +   K  A  AK VE +E  EQ  ++   PS    F  + +T  D   + +  G    V
Sbjct: 180  KTPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSI-GNPPGV 238

Query: 723  TVGEKRKVEALEMDERKKAMLCEKEVLWRANFEKFAFHLRQKACVATVRSQLDDGAAVTL 902
             +G+KRK +AL++D    A   EK+V WRAN+++   HLR KAC+  VR++LD GAA+ L
Sbjct: 239  VIGKKRKQDALKLDTESGAA-SEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVL 297

Query: 903  NAMIDSIKTGGEKVP--------LSSIYENVIKNGEGRNMTEAHVRAALDQIGCHCSRIG 1058
            +AM+++ ++  + V         +S+I E V+++  G +MT   +RA+L Q+GCH + +G
Sbjct: 298  SAMLEATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVG 357

Query: 1059 TEESYSLDLKNIVEIAQNDEVESLVSKRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMEN 1238
             + +Y++DLK I+E+AQNDEVES+V KRYGR A+ +FRLLSK+   + T KI+DT  +E 
Sbjct: 358  ADRTYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEK 417

Query: 1239 MEALKILYSLWKDDYVHMEKLVSHGSAQSQYLLWRVNKRTVREHVFDETCHAALNLRLKL 1418
             EA KILY LWKD+ +HMEK+V + S QSQ++LW+V K T   H+ DE  HAALNL +  
Sbjct: 418  KEAAKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSI-- 475

Query: 1419 AYELEQEREIIQLPKDNRIGAQGKRFERSRQVNILLESSLMKLDEALMLFYDF 1577
                    +II+L +D  +GA     ER  ++ ILL++SLMKLD+ALMLF+DF
Sbjct: 476  --------QIIELRRDKHVGALR---ERDVRLAILLQASLMKLDDALMLFHDF 517


>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
            predicted protein [Populus trichocarpa]
          Length = 519

 Score =  416 bits (1070), Expect = e-114
 Identities = 249/540 (46%), Positives = 349/540 (64%), Gaps = 20/540 (3%)
 Frame = +3

Query: 18   VVQNGIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIGYTELSSQQVKNCLLVLIQH 197
            V Q GIK AV++I+ HFG LV KVC+CLL+KG L L+E + YTELS   V+NCLLVLIQH
Sbjct: 1    VSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQH 60

Query: 198  NCVHAFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGL 377
            NC+  F    ++G  G V K ++ Y  +F+N++HR+RF KF+AIVS+E DK C +L + L
Sbjct: 61   NCLQPFLL-EEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETL 119

Query: 378  LQHGRLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERC--YETVGISQADDK 551
            LQHGRL+ EQI      + + GG    +A++    KLV A YVERC   E      ++++
Sbjct: 120  LQHGRLSSEQIFDGFRDRSSSGG---MEALQENMHKLVMARYVERCPISEPFLALPSEEE 176

Query: 552  NSSTGKRGAKLAK-FVEIETAEQRAMSAGVPSD--RFLFV--PNTGIDATSEANASGKSF 716
             +   +RGAK AK F+E ET EQR + A VP +  RF F   P  G D     N S  + 
Sbjct: 177  AAPVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSSN- 235

Query: 717  DVTVGEKRKVEALEMDERKKAMLCEKEV-LWRANFEKFAFHLRQKACVATVRSQLDDGAA 893
               +G+KRK++ALE D      + +K+V LWR NFE+F   LR K C+ TVR++LDD AA
Sbjct: 236  ---IGDKRKLDALESD--IDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAA 290

Query: 894  VTLNAMIDSIKTGGEK------VPLS--SIYENVIKNGEGRNMTEAHVRAALDQIGCHCS 1049
                AM+D+ ++  +K      VPLS  SIY  VIK+ +GRNMT  +V + L  +G   S
Sbjct: 291  TVFTAMLDASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVL--VGLSSS 348

Query: 1050 ----RIGTEESYSLDLKNIVEIAQNDEVESLVSKRYGRAAYSLFRLLSKTGKLMGTDKIA 1217
                R+  + SYS+D K+ +E+AQ D  ES+V K+YG+ AY +FRLLSK G+L+ TDKI+
Sbjct: 349  PPFVRV-VDNSYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETDKIS 405

Query: 1218 DTLIMENMEALKILYSLWKDDYVHMEKLVSHGSAQSQYLLWRVNKRTVREHVFDETCHAA 1397
            D++ +E  E   IL  +W+ DY+ MEKL+   +  +Q+LLW+VN   +RE V D+  HAA
Sbjct: 406  DSIFLEKKETANILSKMWQGDYLQMEKLI---AGPTQFLLWKVNMINLRERVLDDMFHAA 462

Query: 1398 LNLRLKLAYELEQEREIIQLPKDNRIGAQGKRFERSRQVNILLESSLMKLDEALMLFYDF 1577
            LNL L++AYELEQ++EI+ L  D   G   +++E+ ++V  LLESS MKLD+A+M+F+DF
Sbjct: 463  LNLSLRVAYELEQQKEILHLGVD---GPMKEKYEKLKKVRFLLESSRMKLDDAIMIFHDF 519


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative [Ricinus
            communis] gi|223549895|gb|EEF51382.1| DNA-directed RNA
            polymerase III 62 kDa polypeptide, putative [Ricinus
            communis]
          Length = 485

 Score =  410 bits (1054), Expect = e-112
 Identities = 229/486 (47%), Positives = 318/486 (65%), Gaps = 12/486 (2%)
 Frame = +3

Query: 24   QNGIKLAVNLISTHFGDLVTKVCECLLRKGTLTLQETIGYTELSSQQVKNCLLVLIQHNC 203
            Q+GIK A ++I+ HFG+LV KVC+CLLRKG LT+Q+ + +TEL+  QVKN LLVLIQHNC
Sbjct: 5    QHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHNC 64

Query: 204  VHAFTYNNQDGQEGNVPKGTTQYTAVFENIIHRMRFPKFLAIVSEELDKECEELFQGLLQ 383
            V A+       + G+  K TT Y A+F+NI+HR+RF KFLAI+S++  K C ++ +GLL+
Sbjct: 65   VQAY-------RSGDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLE 117

Query: 384  HGRLTVEQIILRAISKRNEGGCAVQDAIRATFEKLVNAHYVERCYETVGI-SQADDKNSS 560
            HGRLTV+QI+ RA S+ + G     D+++    KLVN  Y+E C  +  + +   ++   
Sbjct: 118  HGRLTVKQIVDRANSRNSIG----LDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDR 173

Query: 561  TGKRGAKLAKFV-EIETAEQRAMSAGVPSDRFLFVPNTGIDATSEA-NASGKSFDVTVGE 734
              KR AK AK V E ET EQR ++  VP D   F  +   +   +A N   KS D  VG+
Sbjct: 174  AKKRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNKSSDKHVGD 233

Query: 735  KRKVEALEMDERKKAMLCEKEVLWRANFEKFAFHLRQKACVATVRSQLDDGAAVTLNAMI 914
            K              +  ++ VLWRANFE+F   LR KAC+  VR +LDDGAA+ L+AM+
Sbjct: 234  K--------------VAEDQVVLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAML 279

Query: 915  DSIKTGGEKVP--------LSSIYENVIKNGEGRNMTEAHVRAALDQIGCHCSRI-GTEE 1067
            D+ +T  +KV         L+SIYE VIKN  GRNMT  H+ +AL Q+G     +   E+
Sbjct: 280  DASRTEEKKVKTASSVPLSLNSIYEEVIKNENGRNMTIDHIESALGQLGSPPPFVKAVED 339

Query: 1068 SYSLDLKNIVEIAQNDEVESLVSKRYGRAAYSLFRLLSKTGKLMGTDKIADTLIMENMEA 1247
             Y++D K+I+E AQ+DEVES+V KRYGR AY +FRLLSK  +L+ TDKI+DT+ +E  E 
Sbjct: 340  LYTIDFKHIIEAAQSDEVESIVLKRYGRDAYRIFRLLSKASRLLETDKISDTIFVEKKET 399

Query: 1248 LKILYSLWKDDYVHMEKLVSHGSAQSQYLLWRVNKRTVREHVFDETCHAALNLRLKLAYE 1427
             KILY +W+DDY+ MEKLV   +  + +LLW+VNK T+ + V DE  HA+LNL +++AYE
Sbjct: 400  TKILYKMWQDDYLLMEKLV---AGTATFLLWKVNKHTLWKQVLDEMFHASLNLSIRVAYE 456

Query: 1428 LEQERE 1445
            LEQ++E
Sbjct: 457  LEQQKE 462