BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015795
         (649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   242   4e-62
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   218   6e-55
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...   218   6e-55
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   213   2e-53
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   213   3e-53

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  242 bits (618), Expect = 4e-62
 Identities = 113/176 (64%), Positives = 138/176 (78%)
 Frame = +1

Query: 121 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 300
           E ++  KE +VTQVSFGGF KDV A++L  +L++EIG  +WRCRLK SWTPPES PNF++
Sbjct: 2   ETKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIG-QVWRCRLKTSWTPPESYPNFEI 60

Query: 301 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCERSFHS 480
            + A +Q+ D Y +VEPHAFVHFASP+SAT AKNAAG CELF+N  P+ V+LG E  FH 
Sbjct: 61  TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 481 NQKRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTK 648
           NQ+RR T PFK S+V  EIGTL S +EFLVGW+GP SGVDF+VDPFDG CK  FT+
Sbjct: 121 NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTR 176


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1200

 Score =  218 bits (556), Expect = 6e-55
 Identities = 104/176 (59%), Positives = 129/176 (73%)
 Frame = +1

Query: 121 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 300
           E E   KE +VTQVS GGF   V AK+L ++L+  IG ++WRCRLK SWTPPES PNF++
Sbjct: 2   EAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 301 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCERSFHS 480
            +I  +++T+DY +V PHAFVHFA P SAT A NA+GRCELF N   L V+LG +  F  
Sbjct: 61  TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 481 NQKRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTK 648
           NQ+RR T PFK S+V  EIG L S +EF VGW+GP SGVDF+VDPFDGTCK  F++
Sbjct: 121 NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSR 176


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1198

 Score =  218 bits (556), Expect = 6e-55
 Identities = 105/176 (59%), Positives = 128/176 (72%)
 Frame = +1

Query: 121 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 300
           E E   KE +VTQVS GGF   V AK+L ++LE EIG ++WRCRLK SWTPPES PNF++
Sbjct: 2   ETEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 301 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCERSFHS 480
            +I  + +T+DY +VEPHAFVHFA P SAT A +AA RCELF N   L  +LG E  F  
Sbjct: 61  TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 481 NQKRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTK 648
           NQ+RR T PFK S V  EIGTL S +EF VGW+GP +GVDF+VDPFDGTC+  F++
Sbjct: 121 NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSR 176


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  213 bits (543), Expect = 2e-53
 Identities = 104/176 (59%), Positives = 132/176 (75%)
 Frame = +1

Query: 121 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 300
           E+E   K+M+VTQ+S GGF + V A EL  +LED IG  + RCRLK S TPPES P+F++
Sbjct: 2   ESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGS-VDRCRLKTSSTPPESYPDFEI 60

Query: 301 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCERSFHS 480
            + A +++T+DY+KVEPHAFVHF SP +AT A +AAG+ ELF +  PL V+LG E  FH 
Sbjct: 61  IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 481 NQKRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTK 648
           NQ+RR T PFKF +V  EIG L S +E+  GW+GP+SGVDF+VDPFDGTCK LFTK
Sbjct: 121 NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTK 176


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
           gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
           6 [Gossypium hirsutum]
          Length = 1196

 Score =  213 bits (541), Expect = 3e-53
 Identities = 100/176 (56%), Positives = 133/176 (75%)
 Frame = +1

Query: 121 ENEKERKEMIVTQVSFGGFGKDVGAKELADFLEDEIGGMIWRCRLKNSWTPPESLPNFQV 300
           E E   KE +VTQVS GGF + V A++L  +LE+E+G ++WRCRLK SWTPPES PNF++
Sbjct: 2   ELEGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 301 QNIADVQKTDDYEKVEPHAFVHFASPNSATKAKNAAGRCELFYNRNPLLVNLGCERSFHS 480
            +   +Q+ D+Y+KVEPHAFVHFASP + T A +AAGR EL +N   L V+LG E  ++ 
Sbjct: 61  TDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYL 120

Query: 481 NQKRRNTDPFKFSEVCAEIGTLASLNEFLVGWKGPASGVDFVVDPFDGTCKILFTK 648
           N++RR+T PFK  +V  EIGTLAS +EF+VGW+GP SGV+F+VDPFD TCK  F++
Sbjct: 121 NRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSR 176