BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015744
         (1101 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif...   130   4e-28
ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycin...   125   1e-26
ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycin...   124   2e-26
ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus ...   125   2e-26
ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arab...   124   3e-26

>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
           gi|147853333|emb|CAN82327.1| hypothetical protein
           VITISV_041807 [Vitis vinifera]
           gi|297740788|emb|CBI30970.3| unnamed protein product
           [Vitis vinifera]
          Length = 321

 Score =  130 bits (328), Expect = 4e-28
 Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 7/232 (3%)
 Frame = +2

Query: 173 AQLVCITCQKLSKEPQFFRSVDLRDLWNYVDWKSGDKKKKLAKEAINRSGGGLVEFSMKL 352
           AQ VC   +KL +EP  +R++D+ +L +  D   G   +++A+ A++RSGG L+   +  
Sbjct: 44  AQFVCSFWRKLCREPMMWRNIDMHNLGDLCDL--GYDLEEMARHAVDRSGGQLLSICIDD 101

Query: 353 FGNDEILHHIAKKTSSLKCIRFAMCGQLSXXXXXXXXXXXXXXXRFSL----YTNEAIEA 520
           F  D +L++I  ++S ++ +R   C  +S                  L    ++ E +EA
Sbjct: 102 FATDNLLNYIIDRSSHIRHLRLVSCYGISDDGLSEGIKRLPLLVEIDLCYCSFSKEVLEA 161

Query: 521 VGCSCKHLKSVRLDGRGVKLP-IGIDEEEFNKLAFGIGKNMPQVRRLEIFRNSLTENGLQ 697
           +G  C  LKS RL+ +G + P I  DEE     A  I +NMP ++ L++F N LT NGL 
Sbjct: 162 IGQCCPRLKSFRLNCQGFRHPHIECDEE-----ALAIAQNMPGLKSLQLFGNKLTNNGLL 216

Query: 698 GILDGCRELEYLDLRHCLCI-MDDDLMKVCADKINVLRSPMDE-DIGDFDWE 847
            ILDGC  LE LDLR C  + +  +L K CA++I +LR P D  D  +FD E
Sbjct: 217 AILDGCCHLESLDLRQCFNVNLGGNLAKRCAEQIKILRYPNDSTDDYEFDAE 268


>ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 311

 Score =  125 bits (314), Expect(2) = 1e-26
 Identities = 80/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%)
 Frame = +2

Query: 173 AQLVCITCQKLSKEPQFFRSVDLRDLWNY-VDWKSGDKKKKLAKEAINRSGGGLVEFSMK 349
           AQ VC   + +SKEP  +R++D+R+L +  +D+        +   AI+ S G L+  +++
Sbjct: 38  AQGVCSVWRAISKEPLLWRTIDMRNLGDIGLDFHL----LAMCHRAIDYSSGHLLHINVE 93

Query: 350 LFGNDEILHHIAKKTSSLKCIRFAMCGQLSXXXXXXXXXXXXXXXRFSL----YTNEAIE 517
            FG D++LHHI   TS+L+ +R A C Q+S                  +     T + +E
Sbjct: 94  YFGTDDLLHHITHSTSNLRSLRLACCYQISDEGLCEIAEKLPQLEELDISISNLTKDPLE 153

Query: 518 AVGCSCKHLKSVRLDGRGVKLP-IGIDEEEFNKLAFGIGKNMPQVRRLEIFRNSLTENGL 694
           A+G  C HLK+++ +  G + P I  DEE     AF I + MP +  L++F N LT  GL
Sbjct: 154 AIGQCCPHLKTLKFNMEGYRRPHIECDEE-----AFAIAETMPGLHHLQLFGNKLTNEGL 208

Query: 695 QGILDGCRELEYLDLRHCLCI-MDDDLMKVCADKINVLRSPMD 820
             ILDGC  LE LDLR C  + +   L K CA++I  LR P D
Sbjct: 209 LAILDGCPLLESLDLRQCFNVNLAGSLGKRCAEQIKELRLPCD 251



 Score = 21.6 bits (44), Expect(2) = 1e-26
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 93  KSATSKDLRNWLDLP 137
           K A +++ RNWLDLP
Sbjct: 5   KEAAAEE-RNWLDLP 18


>ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 318

 Score =  124 bits (311), Expect(2) = 2e-26
 Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 8/224 (3%)
 Frame = +2

Query: 173 AQLVCITCQKLSKEPQFFRSVDLRDLWNYVDWKSGDKKKKLAKEAINRSGGGLVEFSMKL 352
           AQ VC   + +SKEP  +R++D+R   N  D ++      +   AI+ S G L+  +++ 
Sbjct: 44  AQRVCSVWRGISKEPLLWRTIDMR---NSGDIETNFVFLAMCHRAIDYSSGHLLHINIEY 100

Query: 353 FGNDEILHHIAKKTSSLKCIRFAMCGQLSXXXXXXXXXXXXXXXRFSLY------TNEAI 514
           F  D++L HI   TS+L+ +R A C Q+S                  +       T + +
Sbjct: 101 FATDDLLRHITHSTSNLRSLRLACCYQISDEGLCEIAKELPQLEELDISISSFNPTRDPL 160

Query: 515 EAVGCSCKHLKSVRLDGRGVKLP-IGIDEEEFNKLAFGIGKNMPQVRRLEIFRNSLTENG 691
           EAVG  C+HLK+++ + +G + P I  DEE     AF I + MP +  L++F N LT  G
Sbjct: 161 EAVGRCCRHLKTLKFNMKGYRRPHIECDEE-----AFAIAETMPTLHHLQLFGNKLTNEG 215

Query: 692 LQGILDGCRELEYLDLRHCLCI-MDDDLMKVCADKINVLRSPMD 820
           L  ILDGC  LE LDLR C  + +   L K CA++I  LR P D
Sbjct: 216 LLAILDGCPHLESLDLRQCFNVNLAGSLGKRCAEQIKELRLPCD 259



 Score = 21.9 bits (45), Expect(2) = 2e-26
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 99  ATSKDLRNWLDLP 137
           A  ++ RNWLDLP
Sbjct: 12  ADCEEERNWLDLP 24


>ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534044|gb|EEF35763.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 305

 Score =  125 bits (313), Expect = 2e-26
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 5/221 (2%)
 Frame = +2

Query: 173 AQLVCITCQKLSKEPQFFRSVDLRDLWNYVDWKSGDKKKKLAKEAINRSGGGLVEFSMKL 352
           AQ VC +   + K+P  +RSV++  L ++  W      + L + A++RS GGL+  S++ 
Sbjct: 43  AQFVCSSWNSVCKDPSMWRSVEIHPLCDF--WDLPFDLEALCRNAVDRSRGGLISISIEY 100

Query: 353 FGNDEILHHIAKKTSSLKCIRFAMCGQLSXXXXXXXXXXXXXXXRFSL----YTNEAIEA 520
           F  D ++ +IA ++S LK +R      LS                  +     + EA+  
Sbjct: 101 FATDSLIKYIADRSSHLKRLRLLSSYTLSDAAFSKAAKKFPLLEELDISYCSLSTEALVG 160

Query: 521 VGCSCKHLKSVRLDGRGVKLPIGIDEEEFNKLAFGIGKNMPQVRRLEIFRNSLTENGLQG 700
           VG SC  L+S++L+ +G K P      E N+ A  IG+ MP +R L+IF N LT +G+Q 
Sbjct: 161 VGISCPLLRSLKLNCQGYKRP----HIESNEEALAIGQWMPHLRYLQIFGNKLTNDGVQA 216

Query: 701 ILDGCRELEYLDLRHCLCI-MDDDLMKVCADKINVLRSPMD 820
           ILDGC  LE+LDLR C  + ++ +L  +C ++I  LR P D
Sbjct: 217 ILDGCPHLEFLDLRQCFNVHLEGELGMLCGERIKDLRRPDD 257


>ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp.
            lyrata] gi|297320680|gb|EFH51102.1| hypothetical protein
            ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]
          Length = 610

 Score =  124 bits (312), Expect = 3e-26
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 5/225 (2%)
 Frame = +2

Query: 173  AQLVCITCQKLSKEPQFFRSVDLRDLWNYVDWKSGDKKKKLAKEAINRSGGGLVEFSMKL 352
            AQ VC + +++ K+P  +R +D+ +L +      G   + + + A++RS GGLVE  +  
Sbjct: 371  AQKVCRSWRRVCKDPSMWRKIDMDNLGDL--GAMGYDLEIMCRHAVDRSQGGLVEIDIWY 428

Query: 353  FGNDEILHHIAKKTSSLKCIRFAMCGQLSXXXXXXXXXXXXXXXRFSL----YTNEAIEA 520
            FG DE+L++IA ++S+L+ +R  MC  ++                  L     + E+++ 
Sbjct: 429  FGTDELLNYIADRSSNLRTLRLIMCYPIADEGFIEAVVKLPLIEYLELSHCSLSGESLKV 488

Query: 521  VGCSCKHLKSVRLDGRGVKLPIGIDEEEFNKLAFGIGKNMPQVRRLEIFRNSLTENGLQG 700
            VG SC +LK+++L+      P   D+E  N+ A  I ++MP++R L++F N LT  GL  
Sbjct: 489  VGQSCPNLKTLKLNSEPD--PKFNDDEFNNEEALAIAESMPELRHLQLFGNILTNVGLNA 546

Query: 701  ILDGCRELEYLDLRHCLCI-MDDDLMKVCADKINVLRSPMDEDIG 832
            ILDGC  LE+LDLR C  + +  DL K C ++I  L+ P D   G
Sbjct: 547  ILDGCPHLEHLDLRKCSNVDLTGDLEKRCVERIKDLKRPTDSTAG 591



 Score =  111 bits (277), Expect = 4e-22
 Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
 Frame = +2

Query: 173 AQLVCITCQKLSKEPQFFRSVDL-----RDLWNYVDWKSGDKKKKLAKEAINRSGGGLVE 337
           AQ VC + +++ K+P  +R + +     RD++ Y           + + A++RS GGL+E
Sbjct: 33  AQKVCRSWRRVCKDPSMWRKIVIDNSGNRDIFKY-------DLDSMCRHAVDRSQGGLLE 85

Query: 338 FSMKLFGNDEILHHIAKK--------TSSLKCIRFAMCGQLSXXXXXXXXXXXXXXXRFS 493
             ++ FG D++L +IA +        +S+L+ +R   C Q++                  
Sbjct: 86  IDIEYFGTDKLLDYIADRFSLSLFSISSNLRSLRLVRCHQITDKGVAEAVVKLPLLEDLE 145

Query: 494 L----YTNEAIEAVGCSCKHLKSVRLDGRGVKLPIGIDEEEFNKLAFGIGKNMPQVRRLE 661
           +    ++ E +  VG SC HL +++L+ R  ++   I+  + N +A  I ++MP++R L+
Sbjct: 146 VSYCSFSGECLSVVGQSCPHLTTLKLNRRP-RVEFVINMRDHNAIA--IAESMPELRHLQ 202

Query: 662 IFRNSLTENGLQGILDGCRELEYLDLRHCLCI-MDDDLMKVCADKINVLRSPMD 820
           +  N+LT  GL  ILD C  L++LDLR C  I + +D MK C ++I  LR P D
Sbjct: 203 LLGNALTNTGLNAILDSCTHLDHLDLRQCYNINLVEDFMKQCVERIKYLRCPND 256