BLASTX nr result
ID: Coptis25_contig00015671
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00015671
(1853 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524216.1| zinc finger protein, putative [Ricinus commu... 418 e-114
ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like ... 401 e-109
ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like ... 391 e-106
ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidop... 373 e-100
dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana] 372 e-100
>ref|XP_002524216.1| zinc finger protein, putative [Ricinus communis]
gi|223536493|gb|EEF38140.1| zinc finger protein, putative
[Ricinus communis]
Length = 493
Score = 418 bits (1075), Expect = e-114
Identities = 233/482 (48%), Positives = 311/482 (64%), Gaps = 8/482 (1%)
Frame = -2
Query: 1699 SALELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRW 1520
S LE +L++ L VIKP ED R +I + + +AS+ESLRGATVEPFGSFVSNL++RW
Sbjct: 5 SVLEPILRDTLEVIKPLREDWAVRSKIIEELKDVIASIESLRGATVEPFGSFVSNLFTRW 64
Query: 1519 GDLDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNY 1340
GDLDISI L +GS +S KKRKQ +LR+ +AL+++G R QF+P+ARVPLL FES
Sbjct: 65 GDLDISIMLANGSYISSAAKKRKQNVLREFHKALRQKGGWRRLQFVPNARVPLLKFESGR 124
Query: 1339 QSISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSL 1160
Q+ISCD+SI NL GQ+KS FL W+ QID RFRDMVLLVKEWAK+ +IN+PKTGTLNSYSL
Sbjct: 125 QNISCDVSIDNLQGQIKSNFLFWLNQIDGRFRDMVLLVKEWAKAHNINNPKTGTLNSYSL 184
Query: 1159 SLLVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGN 980
SLLVIFHFQTC PAILPPL+E+Y N+ DLTGVR AE +I++ C NIAR+ ++K
Sbjct: 185 SLLVIFHFQTCVPAILPPLKEIYPRNVVDDLTGVRTVAEERIKETCNANIARYMSDKYRA 244
Query: 979 INRSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQ 800
+NRS+LSELFISFF KFS I+ A+ ICT+TGQW I S W+ K++ L I DPFEQ
Sbjct: 245 VNRSSLSELFISFFAKFSGISLKAADLGICTFTGQWLDIRSTMRWLPKTYALFIEDPFEQ 304
Query: 799 AENAARAVGKKELIMISEAFNET-SCMLLGNQEQSFLVTSLVRPQIRSQFS----PNKGN 635
ENAARAV L+ I+EAF T ++L NQ ++ L+ +LVRP+I + + N
Sbjct: 305 PENAARAVSAGNLVKIAEAFQTTYHKLVLANQNRTSLLGTLVRPEILNCIAGTPVRNLSY 364
Query: 634 STFRSGGFGHRADVSSTTRP-VRGQYQGMPLDSYSSPVYSQRQQFRSPVHPIENRFQNWQ 458
++ + S + P V+ Q+Q M + + +QRQ+ + R QN +
Sbjct: 365 TSLHYQSTHPQISKSMYSSPQVQHQFQNMRQEKHQKIFTAQRQEKHPHSSNSQYRVQNTR 424
Query: 457 STLHPSPVVSSQRHLSYSTVRPIQNH--YENRQMESPSLPNVYLPRXXXXXXXXXXXVWR 284
HPS ++ Q H S+ ++ H Y Q + ++ + +WR
Sbjct: 425 LEKHPS-YLAKQGHESHPENTRLERHPNYFAMQKQESNVNTSTRKKPAQYYHGQGQQLWR 483
Query: 283 PR 278
P+
Sbjct: 484 PK 485
>ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera]
gi|296086183|emb|CBI31624.3| unnamed protein product
[Vitis vinifera]
Length = 453
Score = 401 bits (1031), Expect = e-109
Identities = 210/362 (58%), Positives = 265/362 (73%), Gaps = 4/362 (1%)
Frame = -2
Query: 1699 SALELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRW 1520
+ LE++LK+IL VI P ED R +I DFR AV SVESLRGATVEPFGSF+SNLY++W
Sbjct: 5 NVLEIVLKDILLVINPSREDWAIRNQLIADFRTAVDSVESLRGATVEPFGSFLSNLYTQW 64
Query: 1519 GDLDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNY 1340
GDLDISIELP+G+ +S GK+ KQ LL +L AL+ +G R QFIP+ARVP++ FES +
Sbjct: 65 GDLDISIELPNGAYISSAGKRHKQTLLGHVLNALRSKGGWRKLQFIPNARVPIIKFESYH 124
Query: 1339 QSISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSL 1160
+ISCD+SI+NL GQ+KSKFL WI+ ID RFRD+VLLVKEWA++ DIN+ KTGTLNSYSL
Sbjct: 125 PNISCDVSINNLKGQMKSKFLFWISGIDGRFRDLVLLVKEWARAHDINNSKTGTLNSYSL 184
Query: 1159 SLLVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGN 980
SLLV+FH QTC PAILPPL+E+Y GN+A DL GVR E QI++ NI RF+ ++
Sbjct: 185 SLLVVFHLQTCRPAILPPLKEIYPGNVADDLIGVRAVVEGQIEETSAANINRFKRDRSRA 244
Query: 979 INRSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQ 800
NRS+LSELFISF KF I + AS+ IC YTGQW I S WM +++ L + DPFEQ
Sbjct: 245 PNRSSLSELFISFLAKFVDITSRASEQGICPYTGQWVDIDSNMRWMPRTYELFVEDPFEQ 304
Query: 799 AENAARAVGKKELIMISEAFNETSCMLL-GNQEQSFLVTSLVRPQIRSQF---SPNKGNS 632
EN AR V ++L ISEAF T L NQ+Q L+ +LVRPQI +QF +P++ +S
Sbjct: 305 PENTARGVRSRQLQRISEAFQTTHQRLTSANQDQHSLIDTLVRPQI-AQFIRRAPSRNSS 363
Query: 631 TF 626
+
Sbjct: 364 AY 365
>ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus]
gi|449516431|ref|XP_004165250.1| PREDICTED: poly(A) RNA
polymerase GLD2-like [Cucumis sativus]
Length = 464
Score = 391 bits (1004), Expect = e-106
Identities = 224/477 (46%), Positives = 289/477 (60%), Gaps = 5/477 (1%)
Frame = -2
Query: 1693 LELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRWGD 1514
L+ ++K+IL V++P ++D +R+ VIN+ R V S+ESLRGAT+EPFGSFVSNL+SRWGD
Sbjct: 6 LDRVIKDILRVVEPLQDDWTARFQVINELRNVVQSIESLRGATIEPFGSFVSNLFSRWGD 65
Query: 1513 LDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNYQS 1334
LD+S++L +GS S GKKRKQ LLRDI A ++ G Q IPHARVP+L E +
Sbjct: 66 LDLSVQLNNGSYTSTAGKKRKQTLLRDIQNASRKNGRWYKLQLIPHARVPILKIEHIQHN 125
Query: 1333 ISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSLSL 1154
ISCDISI NLVGQ+KSK LLW+ +ID RF DMVLLVKEWAK+ DIN+ K GT NSYSLSL
Sbjct: 126 ISCDISIDNLVGQIKSKILLWVNEIDGRFHDMVLLVKEWAKAHDINNSKQGTFNSYSLSL 185
Query: 1153 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGNIN 974
LVIFHFQTC PAI PPL+++Y GN+ +L GVR E +I C TNIARF++ N
Sbjct: 186 LVIFHFQTCSPAIFPPLRDIYPGNVVDNLKGVRAEVENEIARTCATNIARFKSR---TAN 242
Query: 973 RSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQAE 794
RS+LSELF+SF KFS I++ AS+ IC YTGQW I S W+ K++ + + DPFEQ E
Sbjct: 243 RSSLSELFVSFLAKFSDISSKASELGICPYTGQWLKIESNMRWLPKTYAIFVEDPFEQPE 302
Query: 793 NAARAVGKKELIMISEAFNETSCMLLG-NQEQSFLVTSLVRPQIRSQFSPNKGNSTFRSG 617
N ARA+ ++L+ ISEAF T L Q +S ++ L RPQI SQ N SG
Sbjct: 303 NTARAINARQLMRISEAFRMTHLRLTSVYQNRSSILNDLARPQI-SQLIINS------SG 355
Query: 616 GFGHRADVSSTTRPVRGQYQGMPLDSYSSPVYSQRQQFRSPVHPIENRFQN--WQSTLHP 443
A P+R Q + + P I+++FQN + +
Sbjct: 356 SASAPAFNVENYTPIRPQV--------------HQARVMQPRPWIQHQFQNNIPRFNMGN 401
Query: 442 SPVVSSQR-HLSYSTVRPIQNHYENRQMESPSLPNVY-LPRXXXXXXXXXXXVWRPR 278
P ++SQ H S P+ H + S PNV + WRPR
Sbjct: 402 FPAINSQAPHAGTSQSHPLVQHKTPKTKRIVSSPNVLNVGEPSKTYSGQGQQKWRPR 458
>ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidopsis thaliana]
gi|53850481|gb|AAU95417.1| At2g39740 [Arabidopsis
thaliana] gi|55733735|gb|AAV59264.1| At2g39740
[Arabidopsis thaliana] gi|330254623|gb|AEC09717.1|
Nucleotidyltransferase family protein [Arabidopsis
thaliana]
Length = 511
Score = 373 bits (957), Expect = e-100
Identities = 220/505 (43%), Positives = 294/505 (58%), Gaps = 30/505 (5%)
Frame = -2
Query: 1693 LELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRWGD 1514
L+ L+EIL VIKP D +R VI+ R + SVE LRGATV+PFGSFVSNL++RWGD
Sbjct: 7 LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGD 66
Query: 1513 LDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNYQS 1334
LDIS++L SGS + TGKK+KQ LL +LRAL+ G+ QF+ HARVP+L S +Q
Sbjct: 67 LDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQR 126
Query: 1333 ISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSLSL 1154
ISCDISI NL G +KS+FL WI++ID RFRD+VLLVKEWAK+ +IN KTGT NSYSLSL
Sbjct: 127 ISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSL 186
Query: 1153 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGNIN 974
LVIFHFQTC PAILPPL+ +Y + DLTGVR TAE I + NIARF++ + ++N
Sbjct: 187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246
Query: 973 RSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQAE 794
RS+LSEL +SFF KFS IN A ++ +C +TG+WE I+S +W+ K++ L + DPFEQ
Sbjct: 247 RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306
Query: 793 NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTSLVRPQIR-SQFSPNKGNSTFRSG 617
NAAR+V ++ L I++ F TS L+ ++ ++ L I+ S + S +
Sbjct: 307 NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366
Query: 616 GFGHRADVSSTTRPVRGQYQGMPLDSYSS---PVYSQRQQFRSPVHPIENRFQNWQ---- 458
G + ++ RP Q Q SY++ P + Q R + +N +N Q
Sbjct: 367 GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426
Query: 457 ------------STLHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 341
T SP S R L ++ QN H P+ N
Sbjct: 427 VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486
Query: 340 -VYLPRXXXXXXXXXXXVWRPRHSE 269
V R +WRPRH +
Sbjct: 487 GVNSARPPSKIPSQGGQIWRPRHEQ 511
>dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana]
Length = 511
Score = 372 bits (955), Expect = e-100
Identities = 220/505 (43%), Positives = 294/505 (58%), Gaps = 30/505 (5%)
Frame = -2
Query: 1693 LELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRWGD 1514
L+ L+EIL VIKP D +R VI+ R + SVE LRGATV+PFGSFVSNL++RWGD
Sbjct: 7 LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGD 66
Query: 1513 LDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNYQS 1334
LDIS++L SGS + TGKK+KQ LL +LRAL+ G+ QF+ HARVP+L S +Q
Sbjct: 67 LDISVDLFSGSSILFTGKKQKQILLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQR 126
Query: 1333 ISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSLSL 1154
ISCDISI NL G +KS+FL WI++ID RFRD+VLLVKEWAK+ +IN KTGT NSYSLSL
Sbjct: 127 ISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSL 186
Query: 1153 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGNIN 974
LVIFHFQTC PAILPPL+ +Y + DLTGVR TAE I + NIARF++ + ++N
Sbjct: 187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246
Query: 973 RSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQAE 794
RS+LSEL +SFF KFS IN A ++ +C +TG+WE I+S +W+ K++ L + DPFEQ
Sbjct: 247 RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306
Query: 793 NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTSLVRPQIR-SQFSPNKGNSTFRSG 617
NAAR+V ++ L I++ F TS L+ ++ ++ L I+ S + S +
Sbjct: 307 NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366
Query: 616 GFGHRADVSSTTRPVRGQYQGMPLDSYSS---PVYSQRQQFRSPVHPIENRFQNWQ---- 458
G + ++ RP Q Q SY++ P + Q R + +N +N Q
Sbjct: 367 GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426
Query: 457 ------------STLHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 341
T SP S R L ++ QN H P+ N
Sbjct: 427 VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486
Query: 340 -VYLPRXXXXXXXXXXXVWRPRHSE 269
V R +WRPRH +
Sbjct: 487 GVNSARPPSKIPSQGGQIWRPRHEQ 511