BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015613
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]   112   2e-23
ref|XP_002532388.1| pentatricopeptide repeat-containing protein,...   107   8e-22
ref|XP_003613018.1| Pentatricopeptide repeat-containing protein ...    91   7e-17
ref|NP_201359.1| pentatricopeptide repeat-containing protein [Ar...    91   7e-17
ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arab...    91   1e-16

>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  112 bits (281), Expect = 2e-23
 Identities = 57/110 (51%), Positives = 73/110 (66%)
 Frame = +2

Query: 2   QAEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILV 181
           + +D++ KMN+EGI PDLVTYT L+DGY   G    AFD LK MVD GCKPS    +IL+
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 182 KHFINEKRVFGKSYNMCLDPAANGTSISVADVWKILELETALKLIEKMVE 331
           K+  +E R+      + +D  +N  S+ +ADVWK LE E ALKL EKMVE
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVE 741



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
 Frame = +2

Query: 2   QAEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILV 181
           +A  L   +  +G++ + V YTAL+DGY   G +D A+ +L+RM++  C P+  TY +L+
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 182 KHFINEKR------VFGKSYNMCLDPAANGTSISVADVWKILELETALKLIEKMV 328
           +    EK+      +  K   M + P     +I + ++ K    + ALK+   MV
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV 606



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
 Frame = +2

Query: 2   QAEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILV 181
           +A  ++ +M+++G+ P +VTY AL+DGY   G +D AF++L  M    C P+  TY  L+
Sbjct: 352 EARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411

Query: 182 KHFINEKRV------FGKSYNMCLDPAANGTSISVADVWKILELETALKLIEKMVE 331
                +++V        K     L P+    +  +    K+ +LE+A +L+  M E
Sbjct: 412 CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467


>ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527912|gb|EEF30000.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 676

 Score =  107 bits (268), Expect = 8e-22
 Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
 Frame = +2

Query: 2   QAEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILV 181
           +AED+M  M + G+ PD +TYT ++D YG  G ++ AFDVLKRM D GC PSH TY+ L+
Sbjct: 407 EAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLI 466

Query: 182 KHFINEKRVFGKSYNMCL-DPAANGTSISVADVWKILELETALKLIEKMVE 331
           KH + E+ +  K  N+ L D   N     VADVWK+++ ETAL+L EKM+E
Sbjct: 467 KHLLKEE-LTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLE 516


>ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355514353|gb|AES95976.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 49/110 (44%), Positives = 69/110 (62%)
 Frame = +2

Query: 2   QAEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILV 181
           +AE++++K+ +EGI  D   Y  L++ YG  G +D AF VL RM D GC+PS +TY+IL+
Sbjct: 628 EAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILL 687

Query: 182 KHFINEKRVFGKSYNMCLDPAANGTSISVADVWKILELETALKLIEKMVE 331
           KH I EK  + K   M LD  +   S+  A++WKI + E    L EKMVE
Sbjct: 688 KHLIFEK--YNKE-GMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVE 734


>ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|110737310|dbj|BAF00601.1| hypothetical protein
           [Arabidopsis thaliana] gi|332010688|gb|AED98071.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 915

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 46/109 (42%), Positives = 68/109 (62%)
 Frame = +2

Query: 5   AEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILVK 184
           AED+M KM + G+ PDL TY++L+ GYG+ G  + AFDVLKRM D GC+PS  T+  L+K
Sbjct: 656 AEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715

Query: 185 HFINEKRVFGKSYNMCLDPAANGTSISVADVWKILELETALKLIEKMVE 331
           H +  K  +GK           G+   +  +  ++E +T ++L+EKMVE
Sbjct: 716 HLLEMK--YGKQ---------KGSEPELCAMSNMMEFDTVVELLEKMVE 753


>ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata] gi|297328172|gb|EFH58591.1| hypothetical protein
           ARALYDRAFT_896436 [Arabidopsis lyrata subsp. lyrata]
          Length = 790

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 41/108 (37%), Positives = 68/108 (62%)
 Frame = +2

Query: 2   QAEDLMIKMNKEGIRPDLVTYTALLDGYGNSGPVDCAFDVLKRMVDVGCKPSHETYTILV 181
           +AED+M++M +EG+ PD  TYT+L+  YG  G    AFDVLK M D  C+PSH T+  L+
Sbjct: 520 EAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLI 579

Query: 182 KHFINEKRVFGKSYNMCLDPAANGTSISVADVWKILELETALKLIEKM 325
           K   +++ V  KS    ++  +N   +  +++WK++E +  ++L E+M
Sbjct: 580 KQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEM 627