BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015611
         (1618 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-li...   592   e-167
ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) syntha...   590   e-166
ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Rici...   585   e-164
ref|XP_002865017.1| nitrogen regulation family protein [Arabidop...   579   e-163
ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis tha...   578   e-162

>ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera]
          Length = 424

 Score =  592 bits (1526), Expect = e-167
 Identities = 294/389 (75%), Positives = 327/389 (84%), Gaps = 3/389 (0%)
 Frame = +3

Query: 117  MTTPTSEHED---DECICSDTNDLSLLEQPLSSKNSPSCTLSKDLYIERAWAHWKKLGQP 287
            +T P    +D   D+ ICS+  +    E   SS + PS  L+ +  IERAWAHWKKLGQP
Sbjct: 35   LTLPAGSPQDSNLDDHICSEQQEHQ--ECQSSSADWPSRCLTGESRIERAWAHWKKLGQP 92

Query: 288  KFIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQRNMEFTTCKEDRPLFVQ 467
            K IVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSR+F ENEK R+ EFTTCKEDRPLFVQ
Sbjct: 93   KLIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRIFSENEKYRSQEFTTCKEDRPLFVQ 152

Query: 468  FCANDPDILLEAAKLVEQHCDYVDINLGCPQRIARRGNYGAFLMDNLPVVRSLVQSLADN 647
            FCANDPD LLEAA+ VE +CDYVDINLGCPQRIARRGNYGAFLMDNLP+V+SLV+ LA N
Sbjct: 153  FCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 212

Query: 648  LHVPVSCKIRIFPDMQDTIKYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKDVKA 827
            LHVPVSCKIR+FP++QDTI YARMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK VK 
Sbjct: 213  LHVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 272

Query: 828  ALRIPVLANGNIRHMDDVLSCLEETGVDGVLSAEPLLENPALFAGFRTAEWVDKEEEGIE 1007
            A+ IPVLANG+IRHMDDV  CLEETG DGVLSAE LLENPALFAGF+TAEW    EEG +
Sbjct: 273  AVSIPVLANGDIRHMDDVQRCLEETGADGVLSAESLLENPALFAGFQTAEWALGGEEGNK 332

Query: 1008 GDLLDQADLLVEYLKLCERYPVPWRMIRCHVHKLLGDWFKIHPEVREDLNKQSKLTFEFL 1187
               LDQA+LLVEYLKLCE+YPVPWRMIR HVHKLLG+WF+I P+VR+DLN QSKLTFEFL
Sbjct: 333  DGELDQANLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPQVRDDLNSQSKLTFEFL 392

Query: 1188 YDIVKRLRELGTRIPLYAKSSHAAFSPKG 1274
            Y++V +LRELG RIPLY K + A  +  G
Sbjct: 393  YNMVDQLRELGVRIPLYTKDTPAGRTSNG 421


>ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
            [Cucumis sativus] gi|449484028|ref|XP_004156763.1|
            PREDICTED: tRNA-dihydrouridine(16/17) synthase
            [NAD(P)(+)]-like [Cucumis sativus]
          Length = 426

 Score =  590 bits (1520), Expect = e-166
 Identities = 283/374 (75%), Positives = 321/374 (85%)
 Frame = +3

Query: 135  EHEDDECICSDTNDLSLLEQPLSSKNSPSCTLSKDLYIERAWAHWKKLGQPKFIVAPMVD 314
            +HE      S +ND + L        SP+  LS++  IERAWAHW KLG+PK IVAPMVD
Sbjct: 52   QHESSSLTNSTSNDSTPL------LGSPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVD 105

Query: 315  NSELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQRNMEFTTCKEDRPLFVQFCANDPDIL 494
            NSELPFR+LCRKYGA+AAYTPMLHSR+F ENEK RNMEFTTC+EDRPLFVQFCANDPD+L
Sbjct: 106  NSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVL 165

Query: 495  LEAAKLVEQHCDYVDINLGCPQRIARRGNYGAFLMDNLPVVRSLVQSLADNLHVPVSCKI 674
            LEAA+ VE +CDYVD+NLGCPQRIARRGNYGAFLMDNLP+V+++V+ LA NL VPVSCKI
Sbjct: 166  LEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKI 225

Query: 675  RIFPDMQDTIKYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKDVKAALRIPVLAN 854
            RIFP++QDTI YARMLEDAGCSLLAVHGRTRDEKDGKKFRA+W+AI  VK A+RIPVLAN
Sbjct: 226  RIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLAN 285

Query: 855  GNIRHMDDVLSCLEETGVDGVLSAEPLLENPALFAGFRTAEWVDKEEEGIEGDLLDQADL 1034
            GNIRHM+DV  CL+ETGV+GVLSAE LLENPALFAGFRTAEW++  EE      LDQADL
Sbjct: 286  GNIRHMEDVNDCLQETGVEGVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADL 345

Query: 1035 LVEYLKLCERYPVPWRMIRCHVHKLLGDWFKIHPEVREDLNKQSKLTFEFLYDIVKRLRE 1214
            LV+YLKLCE+YPVPWRMIR HVHKLLGDWFKIHP +RED N QSKLTFEFLY++V+RLRE
Sbjct: 346  LVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRE 405

Query: 1215 LGTRIPLYAKSSHA 1256
            L  ++PLY K SHA
Sbjct: 406  LQVKMPLYIKDSHA 419


>ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
            gi|223526922|gb|EEF29128.1| tRNA-dihydrouridine synthase,
            putative [Ricinus communis]
          Length = 426

 Score =  585 bits (1507), Expect = e-164
 Identities = 284/394 (72%), Positives = 324/394 (82%), Gaps = 11/394 (2%)
 Frame = +3

Query: 135  EHEDDECICSDTND----LSLLEQPLSSK----NSPSCTLSKDLYIERAWAHWKKLGQPK 290
            +++DDE +CS  +      S L   +SS      +PSC L+ +  ++RAWAHW K+G+PK
Sbjct: 33   DNDDDEVLCSSAHQEHTSFSTLPDTVSSSCLGSATPSCYLNGESRVDRAWAHWNKIGKPK 92

Query: 291  FIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQRNMEFTTCKEDRPLFVQF 470
             +VAPMVDNSELPFRMLCRKYGA AAYTPMLHSR+F ENEK R  EFTTC EDRPLFVQF
Sbjct: 93   LLVAPMVDNSELPFRMLCRKYGADAAYTPMLHSRIFTENEKYRTQEFTTCNEDRPLFVQF 152

Query: 471  CANDPDILLEAAKLVEQHCDYVDINLGCPQRIARRGNYGAFLMDNLPVVRSLVQSLADNL 650
            CANDPDILLEAA+ VE +CDYVDINLGCPQRIARRGNYGAFLMDNLP+V+SLV+ LA NL
Sbjct: 153  CANDPDILLEAARKVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 212

Query: 651  HVPVSCKIRIFPDMQDTIKYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKDVKAA 830
            +VPVSCKIR+FP + DTI YARMLE+AGCSLLAVHGRTRDEKDGKKFRADW AIK V+ A
Sbjct: 213  NVPVSCKIRLFPKLDDTISYARMLEEAGCSLLAVHGRTRDEKDGKKFRADWKAIKAVRNA 272

Query: 831  LRIPVLANGNIRHMDDVLSCLEETGVDGVLSAEPLLENPALFAGFRTAEWVDKEEEGIEG 1010
            ++IP+LANGN+RHMDDV +CLEETG DGVLSAE LLENPALFAGFRTAEWV  +EE    
Sbjct: 273  VKIPLLANGNVRHMDDVRNCLEETGADGVLSAESLLENPALFAGFRTAEWVVGDEESTRD 332

Query: 1011 DLLDQADLLVEYLKLCERYPVPWRMIRCHVHKLLGDWFKIHPEVREDLNKQSKLTFEFLY 1190
              LDQADLLVEYLKLCE YPVPWRMIR HVHK+LGDWF+IHP VRE+LN QS+LTFEFLY
Sbjct: 333  GKLDQADLLVEYLKLCEEYPVPWRMIRAHVHKMLGDWFRIHPHVREELNAQSRLTFEFLY 392

Query: 1191 DIVKRLRELGTRIPLYAK---SSHAAFSPKGFTN 1283
            ++V +LR LG RIPLY K   +S    +  G TN
Sbjct: 393  NVVDQLRALGVRIPLYVKDLDTSATGVAANGLTN 426


>ref|XP_002865017.1| nitrogen regulation family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297310852|gb|EFH41276.1| nitrogen regulation family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 423

 Score =  579 bits (1493), Expect = e-163
 Identities = 288/416 (69%), Positives = 337/416 (81%), Gaps = 15/416 (3%)
 Frame = +3

Query: 69   KLPSLNFLFTLFPKSFM--TTPTSEHED---------DECICSDTNDLSL---LEQPLSS 206
            KL   N  F L  KSF+  T   +++ D         D+ +CS+  D  +   ++   +S
Sbjct: 2    KLNLSNLRFLLTRKSFISQTRAMTQNPDPKPDPSKVIDDLLCSEQRDGQIEETVDAVAAS 61

Query: 207  KNSPSCTLSKDLYIERAWAHWKKLGQPKFIVAPMVDNSELPFRMLCRKYGAQAAYTPMLH 386
              SPS  LS D  +ERAWAHWKKLG+PK+IVAPMVDNSELPFR+LC+KYGAQAAYTPMLH
Sbjct: 62   LGSPSRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLH 121

Query: 387  SRLFLENEKQRNMEFTTCKEDRPLFVQFCANDPDILLEAAKLVEQHCDYVDINLGCPQRI 566
            SR+F E EK RN EFTTCKEDRPLFVQFCANDPD LLEAAK VE +CDYVDINLGCPQRI
Sbjct: 122  SRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRI 181

Query: 567  ARRGNYGAFLMDNLPVVRSLVQSLADNLHVPVSCKIRIFPDMQDTIKYARMLEDAGCSLL 746
            ARRGNYGAFLMDNLP+V+SLV+ LA NL+VPVSCKIRIFP++QDT+KYA+MLEDAGCSLL
Sbjct: 182  ARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLQDTLKYAKMLEDAGCSLL 241

Query: 747  AVHGRTRDEKDGKKFRADWNAIKDVKAALRIPVLANGNIRHMDDVLSCLEETGVDGVLSA 926
            AVHGRTRDEKDGKK RADW+AIK+VK ALRIPVL NGN+R ++DV +C++ETGV+GVLSA
Sbjct: 242  AVHGRTRDEKDGKKLRADWSAIKEVKNALRIPVLGNGNVRCIEDVDNCIKETGVEGVLSA 301

Query: 927  EPLLENPALFAGFRTAEWV-DKEEEGIEGDLLDQADLLVEYLKLCERYPVPWRMIRCHVH 1103
            E LLENPA FAGFRTAEWV + EEEG     LDQ DL+VEYLKLCE++PVPWRMIR HVH
Sbjct: 302  ETLLENPAAFAGFRTAEWVSENEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVH 361

Query: 1104 KLLGDWFKIHPEVREDLNKQSKLTFEFLYDIVKRLRELGTRIPLYAKSSHAAFSPK 1271
            K+LG+WF+IHP+VRE LN Q+ LTFEFLY +V +LRELG R+PLY K      +P+
Sbjct: 362  KMLGEWFRIHPQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKKKEIDTLTPQ 417


>ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
            gi|10177609|dbj|BAB10956.1| unnamed protein product
            [Arabidopsis thaliana] gi|15146316|gb|AAK83641.1|
            AT5g67220/K21H1_18 [Arabidopsis thaliana]
            gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18
            [Arabidopsis thaliana] gi|332010932|gb|AED98315.1|
            tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
          Length = 423

 Score =  578 bits (1491), Expect = e-162
 Identities = 278/379 (73%), Positives = 324/379 (85%), Gaps = 4/379 (1%)
 Frame = +3

Query: 147  DECICSDTNDLSL---LEQPLSSKNSPSCTLSKDLYIERAWAHWKKLGQPKFIVAPMVDN 317
            D+ +CS+  D  +   ++   +S  SPS  LS D  +ERAWAHWKKLG+PK+IVAPMVDN
Sbjct: 39   DDILCSEQRDGQIEETVDTAPASLGSPSRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDN 98

Query: 318  SELPFRMLCRKYGAQAAYTPMLHSRLFLENEKQRNMEFTTCKEDRPLFVQFCANDPDILL 497
            SELPFR+LC+KYGAQAAYTPMLHSR+F E EK RN EFTTCKEDRPLFVQFCANDPD LL
Sbjct: 99   SELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLL 158

Query: 498  EAAKLVEQHCDYVDINLGCPQRIARRGNYGAFLMDNLPVVRSLVQSLADNLHVPVSCKIR 677
            EAAK VE +CDYVDINLGCPQRIARRGNYGAFLMDNLP+V+SLV+ LA NL+VPVSCKIR
Sbjct: 159  EAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIR 218

Query: 678  IFPDMQDTIKYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKDVKAALRIPVLANG 857
            IFP+++DT+KYA+MLEDAGCSLLAVHGRTRDEKDGKKFRADW+AIK+VK A+RIPVLANG
Sbjct: 219  IFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWSAIKEVKNAMRIPVLANG 278

Query: 858  NIRHMDDVLSCLEETGVDGVLSAEPLLENPALFAGFRTAEWV-DKEEEGIEGDLLDQADL 1034
            N+R ++DV +C++ETGV+GVLSAE LLENPA FAGFRTAEW  D EEEG     LDQ DL
Sbjct: 279  NVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDL 338

Query: 1035 LVEYLKLCERYPVPWRMIRCHVHKLLGDWFKIHPEVREDLNKQSKLTFEFLYDIVKRLRE 1214
            +VEYLKLCE++PVPWRMIR HVHK+LG+WF+IHP+VRE LN Q+ LTFEFLY +V +LRE
Sbjct: 339  VVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVREQLNAQNILTFEFLYGLVDQLRE 398

Query: 1215 LGTRIPLYAKSSHAAFSPK 1271
            LG R+PLY K      +P+
Sbjct: 399  LGGRVPLYKKKKIDTLTPQ 417