BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015604
         (1663 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   455   e-125
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   441   e-121
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   429   e-118
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      428   e-117
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-...   419   e-115

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  455 bits (1171), Expect = e-125
 Identities = 252/369 (68%), Positives = 298/369 (80%), Gaps = 5/369 (1%)
 Frame = -1

Query: 1342 MATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 1163
            MATAAVIGLSAGK  LSS+ YYSD+T+KL S ++HGL  +Q  STK +I AKKS+++G S
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 1162 SPS-DRHAQAIKALKEHVNTYSA-ATADESLEKLDFMLEGNFDMESSLEALLLLQKSMLE 989
             PS +R+ Q+IKALKEHV+T SA +TA    +  + M E + D++ S+EALLLLQKSMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 988  KQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRS--MRKYVTNSD-AVPPTRRKPI 818
            KQWNLSFE+  +   P   S   + VT SGVSARQRR    RK ++ S   V     K +
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 817  GPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPS 638
               VSP+LL NR++ YVKGV+SEELL+HAEVV LS+ IKAGLSLED+KS+LK+RLG DPS
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 637  EDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLI 458
            ++Q+ATSL+IS AEL++K I CSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLI
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 457  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRL 278
            GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVE SRTLRLP HLHERL LIRNAKIRL
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 277  EEKGITPSI 251
            EEKG+TPSI
Sbjct: 361  EEKGVTPSI 369


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  441 bits (1135), Expect = e-121
 Identities = 243/370 (65%), Positives = 297/370 (80%), Gaps = 5/370 (1%)
 Frame = -1

Query: 1345 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 1166
            MMATAAVIGLS+GK  LSSS YYSD+T+KL +V+DHG+  + T +TKNVI AKKS+++G 
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 1165 SSPS-DRHAQAIKALKEHVNTYSAATADESLEK-LDFMLEGNFDMESSLEALLLLQKSML 992
            S PS +R++ +IKALKEHV+T SA++   +  K  D   E +  ++ S+EALLLLQKSML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 991  EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR--SMRKYVTNSDAVPPTRR-KP 821
            EKQWNLSFE+  +     + +   + VT SGVSARQRR  + RK    S  +  +   K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 820  IGPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDP 641
            +  + SPDLL NR++ YVKGV+S+E+L H EVV LS+ I+AGLS ED+KS+LK+RLG +P
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 640  SEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGL 461
            S++Q+A SLRIS A+L++KLI+CSLAREKLAMSNVRLVMSIAQKYDNMGAE+ADLVQ GL
Sbjct: 241  SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 460  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIR 281
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+ SRTLRLP HLHERL LIRNAKIR
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 280  LEEKGITPSI 251
            LEEKG+TPSI
Sbjct: 361  LEEKGVTPSI 370


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
            gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  429 bits (1104), Expect = e-118
 Identities = 239/370 (64%), Positives = 286/370 (77%), Gaps = 5/370 (1%)
 Frame = -1

Query: 1345 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 1166
            MMATAA+IGL A K  L+SS YYSD T+K+   +D+ L Q Q  S+K+V+ AK S +F  
Sbjct: 1    MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 1165 SSPS-DRHAQ-AIKALKEHVNTYSAATADESLEKLDFMLEGNFDMESSLEALLLLQKSML 992
              PS +RH+Q  IKA+KEHV T S+  A E         +   +++ ++EALLLLQKSML
Sbjct: 61   RYPSSNRHSQQCIKAVKEHVETPSSPIA-EPWHNTTSWEDEETELKYTVEALLLLQKSML 119

Query: 991  EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRSMRKYVTNSDAV---PPTRRKP 821
            EKQW+LSFEQ  +   PKE +   V VT SGVSARQRR   K    S  V    P   K 
Sbjct: 120  EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 179

Query: 820  IGPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDP 641
            + P +SP+LL NR++ YVKG+LSEELL+HAEVV LSKKIK GL+LE+ K++LK+RLG +P
Sbjct: 180  LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 239

Query: 640  SEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGL 461
            SEDQLA SL+IS AELR++++E SLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GL
Sbjct: 240  SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 460  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIR 281
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE SRTLRLPTHLHERL LIRNAK++
Sbjct: 300  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 359

Query: 280  LEEKGITPSI 251
            L+EKGITPS+
Sbjct: 360  LQEKGITPSL 369


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  428 bits (1101), Expect = e-117
 Identities = 235/373 (63%), Positives = 280/373 (75%), Gaps = 8/373 (2%)
 Frame = -1

Query: 1345 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 1166
            MM+TAAVIGLSAGK  LSSS YYSD+ +KL    DH L  H   S KNVI+AKKS+ +  
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 1165 SSPSDRHAQAIKALKEHVNTYSAATADES-----LEKLDFMLEGNFDMESSLEALLLLQK 1001
            S  S R +Q+ K+LKEHV+     TAD S      E  + +   + D + S+E LLLLQK
Sbjct: 61   SCVSSRKSQSAKSLKEHVDI----TADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQK 116

Query: 1000 SMLEKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRS---MRKYVTNSDAVPPTR 830
            SMLEKQWNLS EQ  T     E     + +T SG SAR+RR     R    +S A P + 
Sbjct: 117  SMLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSA 176

Query: 829  RKPIGPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLG 650
             KP+  I+ P+LL NR++ YVKGV+SEELLTHAEV+ LSKKI+ GL LE+ KS+LK+RLG
Sbjct: 177  AKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLG 236

Query: 649  YDPSEDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQ 470
             +PS+DQLA SL++S  +L++ LIECSLARE+LAMSNVRLVMSIAQ+YDN+GAE+ADLVQ
Sbjct: 237  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296

Query: 469  AGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNA 290
             GLIGLLRGIEKFD SKG+KISTYVYWWIRQGVSRALVE SRTLRLPT+LHERLSLIRNA
Sbjct: 297  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNA 356

Query: 289  KIRLEEKGITPSI 251
            K RLEEKGITPS+
Sbjct: 357  KARLEEKGITPSV 369


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 503

 Score =  419 bits (1078), Expect = e-115
 Identities = 236/369 (63%), Positives = 286/369 (77%), Gaps = 5/369 (1%)
 Frame = -1

Query: 1342 MATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 1163
            MATAAVIGLS GK  LSSS +YSD+ +KL    D G   +Q V TK++I AKKS+++  +
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 1162 SP-SDRHAQAIKALKEHVNTYSAATAD---ESLEKLDFMLEGNFDMESSLEALLLLQKSM 995
             P S++  Q+IKALKEHV+  +   AD   +S    D  +E + +M  S+EALLLLQKSM
Sbjct: 61   FPASNQQNQSIKALKEHVDD-APTIADPWFQSYNSNDLEVESS-EMGYSVEALLLLQKSM 118

Query: 994  LEKQWNLSFEQRRTLKEPKEGS-CNSVEVTGSGVSARQRRSMRKYVTNSDAVPPTRRKPI 818
            LEKQWNLSFE+    +   +G  C  V VT SGVSARQRR   K  T   A+       +
Sbjct: 119  LEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKT---AIKTCGAMQL 175

Query: 817  GPIVSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPS 638
               +SP+LL +R++ YVKG++SEELL+HAEVV+LS+KIK GLSLE++KS+LK++LG +PS
Sbjct: 176  KSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPS 235

Query: 637  EDQLATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLI 458
            +DQ+ATSL+IS  ELR ++IECSLAREKLAMSNVRLVMSIAQKYDN+GAE+ DLVQ GLI
Sbjct: 236  DDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLI 295

Query: 457  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRL 278
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE SRTLRLP HLHERLSLIRNAK RL
Sbjct: 296  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRL 355

Query: 277  EEKGITPSI 251
            EE+GITP+I
Sbjct: 356  EERGITPTI 364