BLASTX nr result
ID: Coptis25_contig00015602
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00015602
(1386 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI15248.3| unnamed protein product [Vitis vinifera] 334 e-158
ref|XP_002274899.1| PREDICTED: F-box/kelch-repeat protein SKIP11... 329 e-156
emb|CAN67279.1| hypothetical protein VITISV_022021 [Vitis vinifera] 320 e-153
ref|XP_003631294.1| PREDICTED: F-box/kelch-repeat protein SKIP11... 310 e-149
ref|XP_003613674.1| F-box/kelch-repeat protein SKIP11 [Medicago ... 305 e-147
>emb|CBI15248.3| unnamed protein product [Vitis vinifera]
Length = 482
Score = 334 bits (857), Expect(2) = e-158
Identities = 158/193 (81%), Positives = 170/193 (88%), Gaps = 3/193 (1%)
Frame = -2
Query: 920 GCDSQGRVLCSAELYNSETGTWVTLPSMNKPRKMCSGVFMDGKFYVIGG---SNSELLSC 750
GCD +G +L SAELYNS+TGTWVTLPSMNKPRKMCSG+FMD KFYVIGG NS L+C
Sbjct: 290 GCDPRGNILSSAELYNSDTGTWVTLPSMNKPRKMCSGIFMDRKFYVIGGIGVGNSNSLTC 349
Query: 749 GEEYNLETRTWREIPNMFPGRNGPTEAPPLVAVVNNQLYAADYAEKEVRKYNKEQNLWIT 570
GE Y+LE RTWREIPNMFPGRNG APPLVAVVNN+LYAADYAEKEVRKY+K +NLW+T
Sbjct: 350 GEVYDLEMRTWREIPNMFPGRNGSAGAPPLVAVVNNELYAADYAEKEVRKYDKARNLWVT 409
Query: 569 VGRLPERAVSMNGWGLAFRACGDRLIVIGGPRALGGGIIELNSWVPKEGLPQWAVLDRKH 390
VGRLPE+AVSMNGWGLAFRACGDRLIVIGGPR LGGGIIELNSW P EG PQW +L RK
Sbjct: 410 VGRLPEQAVSMNGWGLAFRACGDRLIVIGGPRVLGGGIIELNSWSPGEGPPQWDLLARKQ 469
Query: 389 SGSFVYNCAVMGC 351
SGSFVYNCAVMGC
Sbjct: 470 SGSFVYNCAVMGC 482
Score = 251 bits (641), Expect(2) = e-158
Identities = 116/137 (84%), Positives = 127/137 (92%)
Frame = -1
Query: 1386 SRSDYNLLASLNRSFNSLIRSGELYRLRRMMGVVEHWVYFSCHVLEWEAFDPIRRRWMHL 1207
SRSDY +ASLNRSF SLIR GELYRLRR +G+VEHWVYFSC +L+WEAFDPIRRRWMHL
Sbjct: 159 SRSDYGSIASLNRSFRSLIRGGELYRLRRKLGIVEHWVYFSCDLLQWEAFDPIRRRWMHL 218
Query: 1206 PRMPANECFMCSDKESLAVGTELLVFGKEITSHVIWRYSILTNSWSSGMTMNFPRCLFGS 1027
PRMP+ ECFMCSDKESLAVGTELLVFGKE+TSHV+++YSILTNSWSSGM MN PRCLFGS
Sbjct: 219 PRMPSYECFMCSDKESLAVGTELLVFGKEVTSHVVYKYSILTNSWSSGMNMNSPRCLFGS 278
Query: 1026 ASLGEIAILAGGCDSQG 976
ASLGEIAILAGGCD +G
Sbjct: 279 ASLGEIAILAGGCDPRG 295
>ref|XP_002274899.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like [Vitis vinifera]
Length = 443
Score = 329 bits (843), Expect(2) = e-156
Identities = 159/203 (78%), Positives = 171/203 (84%), Gaps = 13/203 (6%)
Frame = -2
Query: 920 GCDSQGRVLCSAELYNSETGTWVTLPSMNKPRKMCSGVFMDGKFYVIGG---SNSELLSC 750
GCD +G +L SAELYNS+TGTWVTLPSMNKPRKMCSG+FMD KFYVIGG NS L+C
Sbjct: 241 GCDPRGNILSSAELYNSDTGTWVTLPSMNKPRKMCSGIFMDRKFYVIGGIGVGNSNSLTC 300
Query: 749 GEEYNLETRTWREIPNMFPGRNGPT----------EAPPLVAVVNNQLYAADYAEKEVRK 600
GE Y+LE RTWREIPNMFPGRNG EAPPLVAVVNN+LYAADYAEKEVRK
Sbjct: 301 GEVYDLEMRTWREIPNMFPGRNGSAGVAEATPAAAEAPPLVAVVNNELYAADYAEKEVRK 360
Query: 599 YNKEQNLWITVGRLPERAVSMNGWGLAFRACGDRLIVIGGPRALGGGIIELNSWVPKEGL 420
Y+K +NLW+TVGRLPE+AVSMNGWGLAFRACGDRLIVIGGPR LGGGIIELNSW P EG
Sbjct: 361 YDKARNLWVTVGRLPEQAVSMNGWGLAFRACGDRLIVIGGPRVLGGGIIELNSWSPGEGP 420
Query: 419 PQWAVLDRKHSGSFVYNCAVMGC 351
PQW +L RK SGSFVYNCAVMGC
Sbjct: 421 PQWDLLARKQSGSFVYNCAVMGC 443
Score = 251 bits (641), Expect(2) = e-156
Identities = 116/137 (84%), Positives = 127/137 (92%)
Frame = -1
Query: 1386 SRSDYNLLASLNRSFNSLIRSGELYRLRRMMGVVEHWVYFSCHVLEWEAFDPIRRRWMHL 1207
SRSDY +ASLNRSF SLIR GELYRLRR +G+VEHWVYFSC +L+WEAFDPIRRRWMHL
Sbjct: 110 SRSDYGSIASLNRSFRSLIRGGELYRLRRKLGIVEHWVYFSCDLLQWEAFDPIRRRWMHL 169
Query: 1206 PRMPANECFMCSDKESLAVGTELLVFGKEITSHVIWRYSILTNSWSSGMTMNFPRCLFGS 1027
PRMP+ ECFMCSDKESLAVGTELLVFGKE+TSHV+++YSILTNSWSSGM MN PRCLFGS
Sbjct: 170 PRMPSYECFMCSDKESLAVGTELLVFGKEVTSHVVYKYSILTNSWSSGMNMNSPRCLFGS 229
Query: 1026 ASLGEIAILAGGCDSQG 976
ASLGEIAILAGGCD +G
Sbjct: 230 ASLGEIAILAGGCDPRG 246
>emb|CAN67279.1| hypothetical protein VITISV_022021 [Vitis vinifera]
Length = 1318
Score = 320 bits (819), Expect(2) = e-153
Identities = 155/199 (77%), Positives = 167/199 (83%), Gaps = 13/199 (6%)
Frame = -2
Query: 920 GCDSQGRVLCSAELYNSETGTWVTLPSMNKPRKMCSGVFMDGKFYVIGG---SNSELLSC 750
GCD +G +L SAELYNS+TGTWVTLPSMNKPRKMCSG+FMD KFYVIGG NS L+C
Sbjct: 241 GCDPRGNILSSAELYNSDTGTWVTLPSMNKPRKMCSGIFMDRKFYVIGGIGVGNSNSLTC 300
Query: 749 GEEYNLETRTWREIPNMFPGRNGPT----------EAPPLVAVVNNQLYAADYAEKEVRK 600
GE Y+LE RTWREIPNMFPGRNG EAPPLVAVVNN+LYAADYAEKEVRK
Sbjct: 301 GEVYDLEMRTWREIPNMFPGRNGSAGVAEATPAAAEAPPLVAVVNNELYAADYAEKEVRK 360
Query: 599 YNKEQNLWITVGRLPERAVSMNGWGLAFRACGDRLIVIGGPRALGGGIIELNSWVPKEGL 420
Y+K +NLW+TVGRLPE+AVSMNGWGLAFRACGDRLIVIGGPR LGGGIIELNSW P EG
Sbjct: 361 YDKARNLWVTVGRLPEQAVSMNGWGLAFRACGDRLIVIGGPRVLGGGIIELNSWSPGEGP 420
Query: 419 PQWAVLDRKHSGSFVYNCA 363
PQW +L RK SGSFVYNCA
Sbjct: 421 PQWDLLARKQSGSFVYNCA 439
Score = 251 bits (641), Expect(2) = e-153
Identities = 116/137 (84%), Positives = 127/137 (92%)
Frame = -1
Query: 1386 SRSDYNLLASLNRSFNSLIRSGELYRLRRMMGVVEHWVYFSCHVLEWEAFDPIRRRWMHL 1207
SRSDY +ASLNRSF SLIR GELYRLRR +G+VEHWVYFSC +L+WEAFDPIRRRWMHL
Sbjct: 110 SRSDYGSIASLNRSFRSLIRGGELYRLRRKLGIVEHWVYFSCDLLQWEAFDPIRRRWMHL 169
Query: 1206 PRMPANECFMCSDKESLAVGTELLVFGKEITSHVIWRYSILTNSWSSGMTMNFPRCLFGS 1027
PRMP+ ECFMCSDKESLAVGTELLVFGKE+TSHV+++YSILTNSWSSGM MN PRCLFGS
Sbjct: 170 PRMPSYECFMCSDKESLAVGTELLVFGKEVTSHVVYKYSILTNSWSSGMNMNSPRCLFGS 229
Query: 1026 ASLGEIAILAGGCDSQG 976
ASLGEIAILAGGCD +G
Sbjct: 230 ASLGEIAILAGGCDPRG 246
>ref|XP_003631294.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like [Vitis vinifera]
Length = 541
Score = 310 bits (795), Expect(2) = e-149
Identities = 152/201 (75%), Positives = 164/201 (81%), Gaps = 11/201 (5%)
Frame = -2
Query: 920 GCDSQGRVLCSAELYNSETGTWVTLPSMNKPRKMCSGVFMDGKFYVIGG---SNSELLSC 750
GCDSQG +L SAELYNSETG W LPSMNKPRKMCSGVFMDGKFYVIGG S+S+ L C
Sbjct: 341 GCDSQGNILSSAELYNSETGAWEMLPSMNKPRKMCSGVFMDGKFYVIGGIGGSDSKPLPC 400
Query: 749 GEEYNLETRTWREIPNMFPGRNGP--------TEAPPLVAVVNNQLYAADYAEKEVRKYN 594
GEEYNL+TR W EI +M P R+G EAPPLVAVVNN+LYAADYA+ EVRKY
Sbjct: 401 GEEYNLQTRVWTEIADMSPVRSGAPRENETAAAEAPPLVAVVNNELYAADYADMEVRKYE 460
Query: 593 KEQNLWITVGRLPERAVSMNGWGLAFRACGDRLIVIGGPRALGGGIIELNSWVPKEGLPQ 414
KE LW+TVGRLPERAVSMNGWGLAFRACGD+L+VIGGPRALG G IELNSWVP EG PQ
Sbjct: 461 KESRLWLTVGRLPERAVSMNGWGLAFRACGDKLVVIGGPRALGEGFIELNSWVPSEGPPQ 520
Query: 413 WAVLDRKHSGSFVYNCAVMGC 351
W VL K SG+FVYNCAVMGC
Sbjct: 521 WNVLAVKQSGNFVYNCAVMGC 541
Score = 244 bits (623), Expect(2) = e-149
Identities = 115/137 (83%), Positives = 123/137 (89%)
Frame = -1
Query: 1386 SRSDYNLLASLNRSFNSLIRSGELYRLRRMMGVVEHWVYFSCHVLEWEAFDPIRRRWMHL 1207
SRSDY +ASLNRSF S+IRSGELYR RR GV+EHW+YFSC +LEWEAFDPIR RWM L
Sbjct: 210 SRSDYGFIASLNRSFRSIIRSGELYRERRKNGVIEHWIYFSCQLLEWEAFDPIRHRWMRL 269
Query: 1206 PRMPANECFMCSDKESLAVGTELLVFGKEITSHVIWRYSILTNSWSSGMTMNFPRCLFGS 1027
P M NECFMCSDKESLAVGTELLVFGKE+ SHVI+RYSILTNSWSSGM+MN PRCLFGS
Sbjct: 270 PTMTFNECFMCSDKESLAVGTELLVFGKEVMSHVIYRYSILTNSWSSGMSMNAPRCLFGS 329
Query: 1026 ASLGEIAILAGGCDSQG 976
ASLGEIAILAGGCDSQG
Sbjct: 330 ASLGEIAILAGGCDSQG 346
>ref|XP_003613674.1| F-box/kelch-repeat protein SKIP11 [Medicago truncatula]
gi|355515009|gb|AES96632.1| F-box/kelch-repeat protein
SKIP11 [Medicago truncatula]
Length = 480
Score = 305 bits (782), Expect(2) = e-147
Identities = 147/200 (73%), Positives = 169/200 (84%), Gaps = 10/200 (5%)
Frame = -2
Query: 920 GCDSQGRVLCSAELYNSETGTWVTLPSMNKPRKMCSGVFMDGKFYV---IGGSNSELLSC 750
GCDS+GR+L SAELYNSET T+ LPSMNKPRKMCSGVFMDGKFYV IGG +S+LL+C
Sbjct: 281 GCDSEGRILDSAELYNSETQTFELLPSMNKPRKMCSGVFMDGKFYVVGGIGGRDSKLLTC 340
Query: 749 GEEYNLETRTWREIPNMFPGRNG-------PTEAPPLVAVVNNQLYAADYAEKEVRKYNK 591
GEEYNL+TRTW +IP+M PGR+ TEAPPL+AVV+N+LYAADYA+ EV++Y+K
Sbjct: 341 GEEYNLQTRTWTDIPDMSPGRSSRGSEMPAATEAPPLIAVVDNELYAADYADMEVKRYDK 400
Query: 590 EQNLWITVGRLPERAVSMNGWGLAFRACGDRLIVIGGPRALGGGIIELNSWVPKEGLPQW 411
E+ LWITVGRLPERA+SMNGWGLAFRACG+ LIVIGGPR G G IELNSWVP EG PQW
Sbjct: 401 ERKLWITVGRLPERAMSMNGWGLAFRACGNMLIVIGGPRTHGEGFIELNSWVPSEGPPQW 460
Query: 410 AVLDRKHSGSFVYNCAVMGC 351
+L RK SG+FVYNCAVMGC
Sbjct: 461 RLLARKRSGNFVYNCAVMGC 480
Score = 243 bits (619), Expect(2) = e-147
Identities = 111/138 (80%), Positives = 127/138 (92%)
Frame = -1
Query: 1386 SRSDYNLLASLNRSFNSLIRSGELYRLRRMMGVVEHWVYFSCHVLEWEAFDPIRRRWMHL 1207
SRSDY LASLNRSF +IR+GE+YR RR+ G++EHWVYFSC +LEWEA+DPIR+RWMHL
Sbjct: 150 SRSDYGSLASLNRSFREIIRNGEVYRWRRLNGIMEHWVYFSCALLEWEAYDPIRQRWMHL 209
Query: 1206 PRMPANECFMCSDKESLAVGTELLVFGKEITSHVIWRYSILTNSWSSGMTMNFPRCLFGS 1027
PRM +N+CFMCSDKESLAVGTELLVFG+E+ SHVI+RYS+LTNSWSSGM MN PRCLFGS
Sbjct: 210 PRMASNDCFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWSSGMRMNAPRCLFGS 269
Query: 1026 ASLGEIAILAGGCDSQGR 973
ASLGEIAILAGGCDS+GR
Sbjct: 270 ASLGEIAILAGGCDSEGR 287