BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015587
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thalia...   141   2e-37
ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrat...   139   4e-37
gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp...   137   3e-36
ref|NP_190462.1| 40S ribosomal protein S11-1 [Arabidopsis thalia...   137   3e-36
ref|XP_002877637.1| EMB1080 [Arabidopsis lyrata subsp. lyrata] g...   137   3e-36

>ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thaliana]
           gi|11134432|sp|O65569.2|RS112_ARATH RecName: Full=40S
           ribosomal protein S11-2 gi|5708091|emb|CAA18213.2|
           ribosomal protein S11-like [Arabidopsis thaliana]
           gi|7269981|emb|CAB79798.1| ribosomal protein S11-like
           [Arabidopsis thaliana] gi|15028245|gb|AAK76711.1|
           putative ribosomal protein S11 [Arabidopsis thaliana]
           gi|20258899|gb|AAM14143.1| putative ribosomal protein
           S11 [Arabidopsis thaliana] gi|332660410|gb|AEE85810.1|
           40S ribosomal protein S11-2 [Arabidopsis thaliana]
          Length = 159

 Score =  141 bits (355), Expect(2) = 2e-37
 Identities = 66/72 (91%), Positives = 68/72 (94%)
 Frame = +3

Query: 3   FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 182
           F G VSIRGRI+SG CHSAKM RTIIVRRDYLHFVKKY+RYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 183 GDRVTIGQCRPL 218
           GDRVTIGQCRPL
Sbjct: 121 GDRVTIGQCRPL 132



 Score = 40.0 bits (92), Expect(2) = 2e-37
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 281 QCRPLSKTVRFNVLKVVP 334
           QCRPLSKTVRFNVLKV+P
Sbjct: 128 QCRPLSKTVRFNVLKVIP 145


>ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrata subsp. lyrata]
           gi|297315198|gb|EFH45621.1| 40S ribosomal protein S11
           [Arabidopsis lyrata subsp. lyrata]
          Length = 159

 Score =  139 bits (351), Expect(2) = 4e-37
 Identities = 65/72 (90%), Positives = 67/72 (93%)
 Frame = +3

Query: 3   FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 182
           F G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 183 GDRVTIGQCRPL 218
           GD VTIGQCRPL
Sbjct: 121 GDHVTIGQCRPL 132



 Score = 40.0 bits (92), Expect(2) = 4e-37
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 281 QCRPLSKTVRFNVLKVVP 334
           QCRPLSKTVRFNVLKV+P
Sbjct: 128 QCRPLSKTVRFNVLKVIP 145


>gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp 67), partial
           [Arabidopsis thaliana]
          Length = 182

 Score =  137 bits (344), Expect(2) = 3e-36
 Identities = 63/72 (87%), Positives = 66/72 (91%)
 Frame = +3

Query: 3   FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 182
           F G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 83  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 142

Query: 183 GDRVTIGQCRPL 218
           GD + IGQCRPL
Sbjct: 143 GDHIIIGQCRPL 154



 Score = 40.0 bits (92), Expect(2) = 3e-36
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 281 QCRPLSKTVRFNVLKVVP 334
           QCRPLSKTVRFNVLKV+P
Sbjct: 150 QCRPLSKTVRFNVLKVIP 167


>ref|NP_190462.1| 40S ribosomal protein S11-1 [Arabidopsis thaliana]
           gi|133866|sp|P16181.1|RS111_ARATH RecName: Full=40S
           ribosomal protein S11-1; AltName: Full=Protein EMBRYO
           DEFECTIVE 1080 gi|454808|gb|AAC14454.1| ribosomal
           protein S11 [Arabidopsis thaliana]
           gi|6522573|emb|CAB62017.1| cytosolic ribosomal protein
           S11 [Arabidopsis thaliana] gi|16649155|gb|AAL24429.1|
           cytosolic ribosomal protein S11 [Arabidopsis thaliana]
           gi|20148571|gb|AAM10176.1| cytosolic ribosomal protein
           S11 [Arabidopsis thaliana] gi|21593611|gb|AAM65578.1|
           cytosolic ribosomal protein S11 [Arabidopsis thaliana]
           gi|332644953|gb|AEE78474.1| 40S ribosomal protein S11-1
           [Arabidopsis thaliana]
          Length = 160

 Score =  137 bits (344), Expect(2) = 3e-36
 Identities = 63/72 (87%), Positives = 66/72 (91%)
 Frame = +3

Query: 3   FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 182
           F G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 183 GDRVTIGQCRPL 218
           GD + IGQCRPL
Sbjct: 121 GDHIIIGQCRPL 132



 Score = 40.0 bits (92), Expect(2) = 3e-36
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 281 QCRPLSKTVRFNVLKVVP 334
           QCRPLSKTVRFNVLKV+P
Sbjct: 128 QCRPLSKTVRFNVLKVIP 145


>ref|XP_002877637.1| EMB1080 [Arabidopsis lyrata subsp. lyrata]
           gi|297323475|gb|EFH53896.1| EMB1080 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 160

 Score =  137 bits (344), Expect(2) = 3e-36
 Identities = 63/72 (87%), Positives = 66/72 (91%)
 Frame = +3

Query: 3   FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 182
           F G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 183 GDRVTIGQCRPL 218
           GD + IGQCRPL
Sbjct: 121 GDHIIIGQCRPL 132



 Score = 40.0 bits (92), Expect(2) = 3e-36
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 281 QCRPLSKTVRFNVLKVVP 334
           QCRPLSKTVRFNVLKV+P
Sbjct: 128 QCRPLSKTVRFNVLKVIP 145