BLASTX nr result
ID: Coptis25_contig00015533
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00015533
(536 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 214 5e-54
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 212 2e-53
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 210 1e-52
ref|NP_196258.1| pentatricopeptide repeat-containing protein [Ar... 189 2e-46
ref|XP_002871218.1| pentatricopeptide repeat-containing protein ... 188 5e-46
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 214 bits (546), Expect = 5e-54
Identities = 101/176 (57%), Positives = 133/176 (75%)
Frame = -3
Query: 528 IYGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEM 349
+YG II+GYLRRN++ KAFD+ ++M ESG+ P S+YTELMQ+LFR +EY + CKLY EM
Sbjct: 416 VYGIIISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEM 475
Query: 348 LESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRT 169
LE G++PD VA+TA+VAGH++ NH+ EAWKVF SM+E+G R T K YSV IKELCK RT
Sbjct: 476 LERGVEPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSYSVFIKELCKISRT 535
Query: 168 DEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEKIDKFKQISRDSKLCSNENE 1
DE +K++NEM+ SK+ +GDE+F + LEKKGE E + K Q+ R K E+E
Sbjct: 536 DEVIKVLNEMQASKIIIGDEVFNWVISYLEKKGETEMVKKVMQMQRTCKFYPQEHE 591
Score = 96.7 bits (239), Expect = 2e-18
Identities = 52/154 (33%), Positives = 89/154 (57%)
Frame = -3
Query: 528 IYGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEM 349
IYGS+++G LRR + +A + SMK+ G P YT L+ + F+ + +A + + +M
Sbjct: 875 IYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTVHVYTSLIVHFFKEKQMRKALETFQKM 934
Query: 348 LESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRT 169
E G +P IV +AL+ GH+ + +A VF ++ KG K YS+ I LCK ++
Sbjct: 935 KEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPFPDFKTYSMFISCLCKVGKS 994
Query: 168 DEALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 67
+EAL+L++EM +S + F+ + F L ++G+
Sbjct: 995 EEALQLLSEMLDSGIIPSTINFRTVMFGLNREGK 1028
Score = 59.3 bits (142), Expect = 3e-07
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Frame = -3
Query: 516 IINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLF--RSSEYNEACKLYHEMLE 343
+I Y R A F MK + P S+Y L+ L + + +EA K + EM+
Sbjct: 738 MIMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKYLIICLCGRKGRKVDEAIKTFLEMIR 797
Query: 342 SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTDE 163
+G PD + + + + + +A + E++ + GF + YS+ I+ LC+A R +E
Sbjct: 798 AGYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPLS-YSLYIRALCRAGRLEE 856
Query: 162 ALKLVNEMRNSKMKVGDEIFQGITFALEKKGE----VEKIDKFKQI 37
AL LV+E+ ++ + I+ + L ++G +EK+D KQI
Sbjct: 857 ALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQI 902
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 212 bits (540), Expect = 2e-53
Identities = 100/178 (56%), Positives = 138/178 (77%)
Frame = -3
Query: 534 GNIYGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYH 355
G +YG IINGYLRRNE+SKA D+F+SMKE GH P S+YTELMQ+LFRS+EY + C+LY
Sbjct: 413 GKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYD 472
Query: 354 EMLESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKAL 175
EMLE G++ D VA+ A+VAGH++ +H+ EAW+VFE+M++KG + T K YS+ IKELCK L
Sbjct: 473 EMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKVL 532
Query: 174 RTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEKIDKFKQISRDSKLCSNENE 1
RTDE +K++ +M+ SKM + DEIF+ + +E+KGE++ I K KQ+ R +L S +E
Sbjct: 533 RTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRICRLHSLNDE 590
Score = 97.4 bits (241), Expect = 1e-18
Identities = 48/153 (31%), Positives = 91/153 (59%)
Frame = -3
Query: 525 YGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEML 346
+ S+++G L++ + +A SMK+ G P YT L+ + FR ++A +++ M
Sbjct: 875 HASLVHGLLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMK 934
Query: 345 ESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTD 166
+ G +P IV +AL+ G++ +V EAW VF S+K KG K YS+ + LC+A +++
Sbjct: 935 QEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSE 994
Query: 165 EALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 67
EAL+L+++M ++ + + F+ + F L ++G+
Sbjct: 995 EALQLLSDMVDNGIVPSNVNFRTVFFGLNREGK 1027
Score = 65.5 bits (158), Expect = 5e-09
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Frame = -3
Query: 516 IINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLF--RSSEYNEACKLYHEMLE 343
+I Y R A +F MK SG P S+Y L+ +L + + +EA K++ EM+
Sbjct: 737 MIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIR 796
Query: 342 SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTDE 163
+G PD + + + + EA K +S+ + GF V YS+ I+ LC+A +E
Sbjct: 797 AGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPAS-YSLYIRALCRAGMLEE 855
Query: 162 ALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVE----KIDKFKQI 37
AL LV+++ K + + L +KG +E K+D KQ+
Sbjct: 856 ALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQV 901
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 210 bits (534), Expect = 1e-52
Identities = 99/178 (55%), Positives = 137/178 (76%)
Frame = -3
Query: 534 GNIYGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYH 355
G +YG IINGYLRRNE+SKA D+F+SMKE GH P S+YTELMQ+LFRS+EY + C+LY
Sbjct: 413 GKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYD 472
Query: 354 EMLESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKAL 175
EMLE G++ D VA+ A+VAGH++ +H+ EAW+VFE+M++KG + T K YS+ IKELCK
Sbjct: 473 EMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKVS 532
Query: 174 RTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEKIDKFKQISRDSKLCSNENE 1
RTDE +K++ +M+ SKM + DEIF+ + +E+KGE++ I K KQ+ R +L S +E
Sbjct: 533 RTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRICRLHSLNDE 590
Score = 97.4 bits (241), Expect = 1e-18
Identities = 48/153 (31%), Positives = 91/153 (59%)
Frame = -3
Query: 525 YGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEML 346
+ S+++G L++ + +A SMK+ G P YT L+ + FR ++A +++ M
Sbjct: 875 HASLVHGLLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMK 934
Query: 345 ESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTD 166
+ G +P IV +AL+ G++ +V EAW VF S+K KG K YS+ + LC+A +++
Sbjct: 935 QEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSE 994
Query: 165 EALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 67
EAL+L+++M ++ + + F+ + F L ++G+
Sbjct: 995 EALQLLSDMVDNGIVPSNVNFRTVFFGLNREGK 1027
Score = 65.5 bits (158), Expect = 5e-09
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Frame = -3
Query: 516 IINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLF--RSSEYNEACKLYHEMLE 343
+I Y R A +F MK SG P S+Y L+ +L + + +EA K++ EM+
Sbjct: 737 MIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIR 796
Query: 342 SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTDE 163
+G PD + + + + EA K +S+ + GF V YS+ I+ LC+A +E
Sbjct: 797 AGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPAS-YSLYIRALCRAGMLEE 855
Query: 162 ALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVE----KIDKFKQI 37
AL LV+++ K + + L +KG +E K+D KQ+
Sbjct: 856 ALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQV 901
>ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product
[Arabidopsis thaliana] gi|332003627|gb|AED91010.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 1030
Score = 189 bits (480), Expect = 2e-46
Identities = 87/175 (49%), Positives = 128/175 (73%)
Frame = -3
Query: 531 NIYGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHE 352
N+YG II+GYLR+N+VSKA + F +K+SG P+ S+YTE+MQ+LF+ ++ + C L++E
Sbjct: 399 NVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNE 458
Query: 351 MLESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALR 172
M+E+GI+PD VA+TA+VAGH+ N V EAWKVF SM+EKG + T K YS+ +KELC++ R
Sbjct: 459 MIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSR 518
Query: 171 TDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEKIDKFKQISRDSKLCSNE 7
DE +K+ N+M SK+ + D+IF + ++EK GE EKI K+I + S +E
Sbjct: 519 YDEIIKIFNQMHASKIVIRDDIFSWVISSMEKNGEKEKIHLIKEIQKRSNSYCDE 573
Score = 103 bits (257), Expect = 2e-20
Identities = 51/153 (33%), Positives = 86/153 (56%)
Frame = -3
Query: 525 YGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEML 346
YGSI++G L+R ++ KA D SMKE G P YT L+ Y F+ + + + +M
Sbjct: 857 YGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKME 916
Query: 345 ESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTD 166
+P +V TA++ G++ V EAW F +M+E+G K YS I LC+A +++
Sbjct: 917 GESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSE 976
Query: 165 EALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 67
+ALKL++EM + + F+ + + L ++G+
Sbjct: 977 DALKLLSEMLDKGIAPSTINFRTVFYGLNREGK 1009
>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297317055|gb|EFH47477.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1029
Score = 188 bits (477), Expect = 5e-46
Identities = 88/175 (50%), Positives = 125/175 (71%)
Frame = -3
Query: 531 NIYGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHE 352
N+YG II+GYLR+N+VSKA + F +K+SG P+ S+YTE+MQ LF+ ++ + C L+ E
Sbjct: 398 NVYGIIISGYLRQNDVSKALEQFEIIKKSGRPPRVSTYTEIMQQLFKLKQFEKGCNLFSE 457
Query: 351 MLESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALR 172
M+ESGI+PD VA+TA+VAGH+ N V EAWKVF SM+EKG + T K YS+ +KELC++ R
Sbjct: 458 MIESGIEPDSVAITAVVAGHLGQNRVAEAWKVFGSMEEKGIKPTWKSYSIFMKELCRSSR 517
Query: 171 TDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEKIDKFKQISRDSKLCSNE 7
DE + L N+M SK+ + D+IF + ++EK GE EKID K+I + + E
Sbjct: 518 YDEIITLFNQMHASKIAIRDDIFSWVISSMEKNGEKEKIDLIKEIQKQCNAYNQE 572
Score = 108 bits (271), Expect = 4e-22
Identities = 53/153 (34%), Positives = 90/153 (58%)
Frame = -3
Query: 525 YGSIINGYLRRNEVSKAFDMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEML 346
YGSI++G L+R ++ KA D SMKE G P YT L+ + F+ ++ + + H+M
Sbjct: 855 YGSIVHGLLQRGDLHKALDKVNSMKEIGIKPGVHVYTSLIVHFFKEKQFEKVLETCHKMK 914
Query: 345 ESGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSVAIKELCKALRTD 166
E +P +V TA++ G++ V EAWK F +++EKG K YS I LC+A +++
Sbjct: 915 EESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQAGKSE 974
Query: 165 EALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 67
+ALKL++EM + + F+ + + L ++G+
Sbjct: 975 DALKLLSEMLDKGIAPSTINFRTVFYGLNREGK 1007