BLASTX nr result

ID: Coptis25_contig00015483 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015483
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002530980.1| conserved hypothetical protein [Ricinus comm...    61   1e-07
ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|222852966|gb|EEE90513.1|
           predicted protein [Populus trichocarpa]
          Length = 687

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
 Frame = -2

Query: 265 YVWAQKGTTTHLYSIPDGIKKLIEKD-APEVLHKPLTPSTYGNYFAALLCAEDYYIE 98
           Y+W QKG +  +Y+IP  I+ LI++D  P VL+KPL+ STY +YFAALL AED+YIE
Sbjct: 233 YMWVQKGMSP-IYAIPKDIEDLIKRDKVPGVLNKPLSLSTYKDYFAALLYAEDFYIE 288


>ref|XP_002530980.1| conserved hypothetical protein [Ricinus communis]
           gi|223529456|gb|EEF31415.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 710

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = -2

Query: 265 YVWAQKGTTTHLYSIPDGIKKLIEKD-APEVLHKPLTPSTYGNYFAALLCAEDYYIE 98
           Y+  QK  T  +Y IP  I+ LI+ D  PEVL KPL+ STY +YFAALL AEDYYIE
Sbjct: 264 YILVQKDITP-IYMIPKDIESLIKSDKVPEVLKKPLSLSTYKDYFAALLYAEDYYIE 319


>ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|222855824|gb|EEE93371.1|
           predicted protein [Populus trichocarpa]
          Length = 773

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/46 (58%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
 Frame = -2

Query: 232 LYSIPDGIKKLIEKD-APEVLHKPLTPSTYGNYFAALLCAEDYYIE 98
           +Y++P  I+ LI++D  PEVL++ L+PSTY +YFAALL AED+YIE
Sbjct: 325 IYAVPKDIEDLIKRDIVPEVLNEMLSPSTYKDYFAALLYAEDFYIE 370


Top