BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015451
         (1439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinu...   319   e-118
ref|XP_002321501.1| predicted protein [Populus trichocarpa] gi|2...   308   e-114
ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helica...   308   e-113
ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helica...   305   e-112
ref|NP_178223.2| DEA(D/H)-box RNA helicase family protein [Arabi...   307   e-112

>ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1172

 Score =  319 bits (818), Expect(2) = e-118
 Identities = 159/267 (59%), Positives = 202/267 (75%)
 Frame = +2

Query: 275  SLPNKETSVSLKTMEDGRVLLYSNSVNGRESNIPYPWLVFNEKVKVNSVFLRDSTAISDS 454
            S+ + E S SLKTMEDG+VLLYSNSVN RES IPYPWLVFNEK+KVN+VFLRDSTA+SDS
Sbjct: 909  SVVHNEKSFSLKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNAVFLRDSTAVSDS 968

Query: 455  MLLLFGGKLSRGDNDGHLKMLGGYLEFFMKPTLAETYTNLKRGLEKIIQIKLLNPKMKIE 634
            +LLLFGG +S+G+ DGHLKMLGGYLEFFMKP +AE Y +L+R L+++I+ KLLNP+M + 
Sbjct: 969  VLLLFGGSISKGETDGHLKMLGGYLEFFMKPIIAEMYQSLRRELDELIKTKLLNPRMDLH 1028

Query: 635  IHRELLSAVRLLITEDQCNGRFVFGHQILKPSKXXXXXXXXXXXXISRNXXXXXXXXDNA 814
             + +LLSA+RLL++ED C+GRF+FG Q+LKPSK             + +        DN+
Sbjct: 1029 AYHDLLSAIRLLVSEDPCDGRFIFGCQVLKPSKMSVTPTQGALASRTES----GPGGDNS 1084

Query: 815  KNQLQTLVTRAGHENPVYKAYLVKNNQFQAMVEINGMQFTGQPCNNRKLAEKDAAAQALL 994
            K+QLQTL+TRAG+  P YK   +KN+QF++ VE NGMQ  GQPCNN+K AEKDAAA+AL 
Sbjct: 1085 KSQLQTLITRAGYAAPTYKTKQLKNSQFRSTVEFNGMQIMGQPCNNKKSAEKDAAAEALR 1144

Query: 995  SLTGRLQACPVDIERMSLLLKQKRKHH 1075
             L G  +  P  I  MS+LLK+ +K H
Sbjct: 1145 WLMGETRTGPEYINHMSMLLKKSKKDH 1171



 Score =  135 bits (340), Expect(2) = e-118
 Identities = 61/89 (68%), Positives = 74/89 (83%)
 Frame = +3

Query: 3    SDHLALIRAYEGWKNAEREYSGPDYCWKNFLSSPTLKAIDSLRKEFICILKDTGVVDDDL 182
            SDHLAL+RAYEGWK+AER ++G DYCWKNFLS  ++KAIDSLRKEF+ +LKD G+VD  +
Sbjct: 823  SDHLALVRAYEGWKDAERNFAGYDYCWKNFLSMQSMKAIDSLRKEFLSLLKDAGLVDGSI 882

Query: 183  HIYNLWSNDGSLIRAVICAGLFPGICSVV 269
               N WS++  LIRAVIC GL+PGICSVV
Sbjct: 883  TFCNTWSHEEHLIRAVICYGLYPGICSVV 911


>ref|XP_002321501.1| predicted protein [Populus trichocarpa] gi|222868497|gb|EEF05628.1|
            predicted protein [Populus trichocarpa]
          Length = 1062

 Score =  308 bits (790), Expect(2) = e-114
 Identities = 157/269 (58%), Positives = 196/269 (72%)
 Frame = +2

Query: 275  SLPNKETSVSLKTMEDGRVLLYSNSVNGRESNIPYPWLVFNEKVKVNSVFLRDSTAISDS 454
            S+ NKE S++LKTMEDG+VLLYSNSVN     IPYPWLVFNEKVKVNSVFLRDST +SDS
Sbjct: 795  SVVNKEKSITLKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDS 854

Query: 455  MLLLFGGKLSRGDNDGHLKMLGGYLEFFMKPTLAETYTNLKRGLEKIIQIKLLNPKMKIE 634
            +LLLFGG + +G  DGHLKMLGGYLEFFMKPTL + Y +LKR LE++IQ KLL+PK+ I+
Sbjct: 855  VLLLFGGNIEKGGLDGHLKMLGGYLEFFMKPTLGDMYLSLKRELEELIQNKLLDPKLDIQ 914

Query: 635  IHRELLSAVRLLITEDQCNGRFVFGHQILKPSKXXXXXXXXXXXXISRNXXXXXXXXDNA 814
             H ELL A+RLL++EDQC GRFVFG Q+  PSK              +         DN+
Sbjct: 915  SHNELLMAIRLLVSEDQCEGRFVFGRQLPAPSK-----------KAEKAKNVAGDGGDNS 963

Query: 815  KNQLQTLVTRAGHENPVYKAYLVKNNQFQAMVEINGMQFTGQPCNNRKLAEKDAAAQALL 994
            KN+LQTL+ RAGHE+P YK   +KNNQF++ V  NG+ F GQPC+++KLAEKDAAA ALL
Sbjct: 964  KNELQTLLARAGHESPAYKTKQLKNNQFRSTVFFNGLDFAGQPCSSKKLAEKDAAAAALL 1023

Query: 995  SLTGRLQACPVDIERMSLLLKQKRKHHQS 1081
             L G   +   + +  S+LLK+ +  +Q+
Sbjct: 1024 WLKGETHSYSRNTDHFSVLLKKSKTTNQN 1052



 Score =  130 bits (328), Expect(2) = e-114
 Identities = 62/89 (69%), Positives = 73/89 (82%)
 Frame = +3

Query: 3   SDHLALIRAYEGWKNAEREYSGPDYCWKNFLSSPTLKAIDSLRKEFICILKDTGVVDDDL 182
           SDHLAL+RAY GWK+AER+ SG +YCWKNFLS+ TLKAIDSLRK+F  +LKDTG+VD  +
Sbjct: 709 SDHLALVRAYNGWKDAERQQSGHEYCWKNFLSAQTLKAIDSLRKQFFYLLKDTGLVDKQI 768

Query: 183 HIYNLWSNDGSLIRAVICAGLFPGICSVV 269
              N  S D  L+RAVICAGLFPG+CSVV
Sbjct: 769 ENCNSRSIDEHLMRAVICAGLFPGLCSVV 797


>ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
            sativus]
          Length = 1168

 Score =  308 bits (789), Expect(2) = e-113
 Identities = 160/272 (58%), Positives = 195/272 (71%)
 Frame = +2

Query: 275  SLPNKETSVSLKTMEDGRVLLYSNSVNGRESNIPYPWLVFNEKVKVNSVFLRDSTAISDS 454
            S+ NKE SV+LKTMEDG+V+LYSNSVN     IPYPWLVFNEKVKVNSVFLRDST +SDS
Sbjct: 897  SVVNKEKSVALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDS 956

Query: 455  MLLLFGGKLSRGDNDGHLKMLGGYLEFFMKPTLAETYTNLKRGLEKIIQIKLLNPKMKIE 634
            +LLLFGG +SRG  DGHLKML GYLEFFMKP LAETY +LKR L++++  KLLNPK+ +E
Sbjct: 957  VLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLLNPKLDME 1016

Query: 635  IHRELLSAVRLLITEDQCNGRFVFGHQILKPSKXXXXXXXXXXXXISRNXXXXXXXXDNA 814
             H ELL+A+RLLI+ED C GRFVFG  +  PSK            + R         DN+
Sbjct: 1017 PHNELLTALRLLISEDHCAGRFVFGRHMPVPSK------KAMTDSLPRQKHGDGGGGDNS 1070

Query: 815  KNQLQTLVTRAGHENPVYKAYLVKNNQFQAMVEINGMQFTGQPCNNRKLAEKDAAAQALL 994
            KNQLQTL+ RAGHE P Y    ++NNQF++ V  NG+ F GQPC ++KLAEKDAAA+ALL
Sbjct: 1071 KNQLQTLLLRAGHETPTYNTKQLRNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALL 1130

Query: 995  SLTGRLQACPVDIERMSLLLKQKRKHHQST*F 1090
             L G   +    I+  S+LLK+ RK + +  F
Sbjct: 1131 WLQGETHSSSQAIDHASILLKKSRKKNTNPSF 1162



 Score =  127 bits (320), Expect(2) = e-113
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 3    SDHLALIRAYEGWKNAEREYSGPDYCWKNFLSSPTLKAIDSLRKEFICILKDTGVVDDDL 182
            SDHLAL+RAY+GW++AE++ SG +YCW+NFLS  TL+AIDSLRK+F  +LKD G+VD D 
Sbjct: 811  SDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDYDS 870

Query: 183  HIYNLWSNDGSLIRAVICAGLFPGICSVV 269
               N+ ++D  LIRAVICAGLFPGICSVV
Sbjct: 871  EKCNISNHDEHLIRAVICAGLFPGICSVV 899


>ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
            sativus]
          Length = 1231

 Score =  305 bits (780), Expect(2) = e-112
 Identities = 159/271 (58%), Positives = 193/271 (71%), Gaps = 4/271 (1%)
 Frame = +2

Query: 275  SLPNKETSVSLKTMEDGRVLLYSNSVNGRESNIPYPWLVFNEKVKVNSVFLRDSTAISDS 454
            S+ NKE SV+LKTMEDG+V+LYSNSVN     IPYPWLVFNEKVKVNSVFLRDST +SDS
Sbjct: 944  SVVNKEKSVALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDS 1003

Query: 455  MLLLFGGKLSRGDNDGHLKMLGGYLEFFMKPTLAETYTNLKRGLEKIIQIKLLNPKMKIE 634
            +LLLFGG +SRG  DGHLKML GYLEFFMKP LAETY +LKR L++++  KLLNPK+ +E
Sbjct: 1004 VLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLLNPKLDME 1063

Query: 635  IHRELLSAVRLLITEDQCNGRFVFGHQILKPSKXXXXXXXXXXXXISRNXXXXXXXXDNA 814
             H ELL+A+RLLI+ED C GRFVFG  +  PSK            + R         DN+
Sbjct: 1064 PHNELLTALRLLISEDHCAGRFVFGRHMPVPSK------KAMTDSLPRQKHGDGGGGDNS 1117

Query: 815  KNQLQTLVTRAGHENPVYKAYLVKNNQFQAMVEINGMQFTGQPCNNRKLAEKDAAAQALL 994
            KNQLQTL+ RAGHE P Y    ++NNQF++ V  NG+ F GQPC ++KLAEKDAAA+ALL
Sbjct: 1118 KNQLQTLLLRAGHETPTYNTKQLRNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALL 1177

Query: 995  SLTGRLQACPVDIERMSLLLKQKRK----HH 1075
             L G   +    I+  S+LLK+  +    HH
Sbjct: 1178 WLQGETHSSSQAIDHASILLKKAERKIPIHH 1208



 Score =  127 bits (320), Expect(2) = e-112
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 3    SDHLALIRAYEGWKNAEREYSGPDYCWKNFLSSPTLKAIDSLRKEFICILKDTGVVDDDL 182
            SDHLAL+RAY+GW++AE++ SG +YCW+NFLS  TL+AIDSLRK+F  +LKD G+VD D 
Sbjct: 858  SDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDYDS 917

Query: 183  HIYNLWSNDGSLIRAVICAGLFPGICSVV 269
               N+ ++D  LIRAVICAGLFPGICSVV
Sbjct: 918  EKCNISNHDEHLIRAVICAGLFPGICSVV 946


>ref|NP_178223.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
            gi|330250311|gb|AEC05405.1| DEA(D/H)-box RNA helicase
            family protein [Arabidopsis thaliana]
          Length = 1113

 Score =  307 bits (786), Expect(2) = e-112
 Identities = 156/267 (58%), Positives = 196/267 (73%)
 Frame = +2

Query: 275  SLPNKETSVSLKTMEDGRVLLYSNSVNGRESNIPYPWLVFNEKVKVNSVFLRDSTAISDS 454
            S+ + E S SLKTMEDG+VLLYSNS N RE+ IPYPWLVFNEK+KVNSVFLRDSTA SDS
Sbjct: 850  SVVHNERSFSLKTMEDGQVLLYSNSENARETKIPYPWLVFNEKIKVNSVFLRDSTACSDS 909

Query: 455  MLLLFGGKLSRGDNDGHLKMLGGYLEFFMKPTLAETYTNLKRGLEKIIQIKLLNPKMKIE 634
             L+LFGG +S+GD DGHLKMLGGYLEFFMKP +AE Y  LK+ L+++IQ KLLNPK+ ++
Sbjct: 910  TLILFGGSISKGDTDGHLKMLGGYLEFFMKPDVAEIYQTLKKELDELIQNKLLNPKVDMQ 969

Query: 635  IHRELLSAVRLLITEDQCNGRFVFGHQILKPSKXXXXXXXXXXXXISRNXXXXXXXXDNA 814
             HRELLSA+RLL++ED C+GRFVFGHQIL+P +             + +        DN+
Sbjct: 970  AHRELLSAIRLLVSEDGCDGRFVFGHQILRPLEISALSTKPSLFSRTES----GPGGDNS 1025

Query: 815  KNQLQTLVTRAGHENPVYKAYLVKNNQFQAMVEINGMQFTGQPCNNRKLAEKDAAAQALL 994
            K+QLQT++TRAG+  P+YK   +KNN+FQ  VE N  Q  GQPC+N+K AEKDAAA+A+ 
Sbjct: 1026 KSQLQTILTRAGYTVPMYKTKQLKNNKFQTTVEFNETQIMGQPCSNKKSAEKDAAAEAIQ 1085

Query: 995  SLTGRLQACPVDIERMSLLLKQKRKHH 1075
             L G  +     +  MS LLK+ +K H
Sbjct: 1086 WLKGGAKESHEQVNHMSKLLKKGKKDH 1112



 Score =  125 bits (313), Expect(2) = e-112
 Identities = 59/89 (66%), Positives = 70/89 (78%)
 Frame = +3

Query: 3    SDHLALIRAYEGWKNAEREYSGPDYCWKNFLSSPTLKAIDSLRKEFICILKDTGVVDDDL 182
            SDHLAL+RAYEGWK AE E +  DYCWKNFLS  +L+AIDSLRKEF  +LKDTG++D + 
Sbjct: 764  SDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNP 823

Query: 183  HIYNLWSNDGSLIRAVICAGLFPGICSVV 269
             I N   ND +L RAVIC G++PGICSVV
Sbjct: 824  SICNSEGNDANLTRAVICYGMYPGICSVV 852