BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015441
         (447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18
emb|CBI21003.3| unnamed protein product [Vitis vinifera]               96   4e-18
ref|XP_002309609.1| predicted protein [Populus trichocarpa] gi|2...    86   3e-15
ref|XP_002515553.1| pentatricopeptide repeat-containing protein,...    83   2e-14
ref|XP_003607325.1| Pentatricopeptide repeat-containing protein ...    71   8e-11

>ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
 Frame = -1

Query: 345 PTESQIPNTPFSKDEISLHSV------VTQDHVIVTLLSQQNDPSGALHYFQWAEKQRGF 184
           P  S  P   +S+D +    +      ++Q+HVI  LL   NDP  AL YF+ AE QRGF
Sbjct: 71  PGNSSSPYPRYSQDTVPTSQIHQETTPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGF 130

Query: 183 VNSVDVFCILVHILV-SSRRDSDVFQLLNQYISGDSSTSPTVFVDHLIETSKK 28
           +  VD +C+L+HIL+ S        +LLN+Y+SGDS  SP VFVDHLI  +K+
Sbjct: 131 IRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKR 183


>emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
 Frame = -1

Query: 345 PTESQIPNTPFSKDEISLHSV------VTQDHVIVTLLSQQNDPSGALHYFQWAEKQRGF 184
           P  S  P   +S+D +    +      ++Q+HVI  LL   NDP  AL YF+ AE QRGF
Sbjct: 31  PGNSSSPYPRYSQDTVPTSQIHQETTPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGF 90

Query: 183 VNSVDVFCILVHILV-SSRRDSDVFQLLNQYISGDSSTSPTVFVDHLIETSKK 28
           +  VD +C+L+HIL+ S        +LLN+Y+SGDS  SP VFVDHLI  +K+
Sbjct: 91  IRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKR 143


>ref|XP_002309609.1| predicted protein [Populus trichocarpa] gi|222855585|gb|EEE93132.1|
           predicted protein [Populus trichocarpa]
          Length = 841

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 10/139 (7%)
 Frame = -1

Query: 393 SLCTTPTISSQN--PSIPPTESQI-----PNTPF--SKDEISLHSVVTQDHVIVTLLSQQ 241
           S+ +  T+SSQ   P+IP +E+ +     PNT F       S  S +TQ   I TLL+ Q
Sbjct: 16  SIKSPKTLSSQPELPNIPISETPLSQNPHPNTNFPGKSAPTSQDSFLTQTQYIDTLLNHQ 75

Query: 240 NDPSGALHYFQWAEKQRGFVNSVDVFCILVHILVSSRRD-SDVFQLLNQYISGDSSTSPT 64
           NDP  AL YF WA ++RG + SVD  C+L+HIL  S         LLN++ S D    P+
Sbjct: 76  NDPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARNLLNRFASDDWGPVPS 135

Query: 63  VFVDHLIETSKKCVLDNNN 7
           V V  LIE+S++   ++++
Sbjct: 136 VVVARLIESSRRLDFESDS 154


>ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545497|gb|EEF47002.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 927

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 28/173 (16%)
 Frame = -1

Query: 444 MRISFSPSP---FLFRLYRN--SLCTTPTISSQN---------PSIPPTESQIPNTPFSK 307
           MR S + SP   F  R + N  SLC+ P   ++          P+    E    ++ FS+
Sbjct: 1   MRSSLTSSPIPQFFIRSFINPKSLCSQPQFPNEPQSSLYQNSYPNFSYAEKNSQDSNFSE 60

Query: 306 DEISLHS-------------VVTQDHVIVTLLSQQNDPSGALHYFQWAEKQRGFVNSVDV 166
           + I L S             V+ + +VI TLLS + DP  AL YF+  E  RGFV S+D 
Sbjct: 61  NLIFLKSRQVELTKPASQDSVLARTNVIDTLLSYKRDPYSALTYFKQLECTRGFVRSLDS 120

Query: 165 FCILVHILV-SSRRDSDVFQLLNQYISGDSSTSPTVFVDHLIETSKKCVLDNN 10
            C+L+HIL  SS        LLN++ISGDS   P + VDH I ++K+   D++
Sbjct: 121 LCVLLHILTRSSETLKQAQNLLNRFISGDSGPMPNILVDHFIGSTKRFDFDSD 173


>ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355508380|gb|AES89522.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
 Frame = -1

Query: 333 QIPNTPFSKDEISL----HSVVTQDHVIVTLLSQQNDPSGALHYFQWAEKQRGFVNSVDV 166
           +IP+TP   ++I +         ++  +VTLLS +++P  AL +F   E++RGFV +VD 
Sbjct: 37  KIPSTPNFPEKIIISPESQPSEKKNRFLVTLLSHKSNPKSALKFFHQVERKRGFVKTVDF 96

Query: 165 FCILVHILVSSRRDSDVFQ-LLNQYISGDSSTSPTVFVDHLIETS 34
             +L+HIL S+ +     Q LLN Y+ GD++ S  VFV+ L+E S
Sbjct: 97  ISLLIHILSSNSKTCSSLQFLLNNYVFGDATPSAKVFVECLLECS 141