BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015366
         (875 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containi...   393   e-107
ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|2...   392   e-107
ref|XP_003617444.1| Pentatricopeptide repeat-containing protein ...   362   6e-98
ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...   362   8e-98
ref|XP_002534070.1| pentatricopeptide repeat-containing protein,...   354   2e-95

>ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
            chloroplastic [Vitis vinifera]
            gi|302143555|emb|CBI22116.3| unnamed protein product
            [Vitis vinifera]
          Length = 533

 Score =  393 bits (1009), Expect = e-107
 Identities = 193/291 (66%), Positives = 236/291 (81%)
 Frame = +3

Query: 3    KLIEAFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLT 182
            +L EA +LF  MQ E IKPSEF +VSLL ASARLGAL+QG+WIH YI KN  ELN IV  
Sbjct: 237  RLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTA 296

Query: 183  AIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFSDLESSGLRP 362
            +IIDMYCKCG I EAF+VF+ +   GLS WN+MI+GLA+NG   EAIQLFS LE S LRP
Sbjct: 297  SIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRP 356

Query: 363  DDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEAL 542
            DDV+F+GVLTACN+SG+V++AK Y SLM++TY IEP+IKHY CMVD LGRAGLLEEAE L
Sbjct: 357  DDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEEL 416

Query: 543  ITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILLSNVYASSGRY 722
            I NM +  DAIIW SLLSACR HGNVE+ +RAAK +V+LD +DS  Y+LLSN+YA+S ++
Sbjct: 417  IRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQF 476

Query: 723  EEAMDARRSMQERGTKREPGCSLIEVNDEVHEFVVGGISHPRAIEIHALLD 875
            EEAM+ R SM+E+  ++EPGCSLIEVN E+HEFV GG  HP+A E+++LL+
Sbjct: 477  EEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLN 527



 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 4/197 (2%)
 Frame = +3

Query: 15  AFELFRDMQR-EGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLTAII 191
           A  LF DM     ++P      S+  A A+LG    G  +H  + K  ++ +  +   II
Sbjct: 108 AISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTII 167

Query: 192 DMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFSDLESSGLRPDDV 371
            MY  CG + E +K F       +  WNSMI+GLA  G  +E+ +LF ++    LR + V
Sbjct: 168 YMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMP---LR-NTV 223

Query: 372 SFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEAL--- 542
           S+  +++    +G + EA      M E   I+P+      +++   R G L++ E +   
Sbjct: 224 SWNSMISGYVRNGRLREALDLFGQMQEER-IKPSEFTMVSLLNASARLGALKQGEWIHDY 282

Query: 543 ITNMSIKADAIIWGSLL 593
           I   + + + I+  S++
Sbjct: 283 IRKNNFELNVIVTASII 299


>ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|222856190|gb|EEE93737.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  392 bits (1007), Expect = e-107
 Identities = 192/291 (65%), Positives = 236/291 (81%)
 Frame = +3

Query: 3    KLIEAFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLT 182
            +  EA ELF  MQ EGIKPSEF +VSLL A A LGAL QG+WIH YI KN   LN+IV+T
Sbjct: 209  RFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVIT 268

Query: 183  AIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFSDLESSGLRP 362
            AIIDMY KCG I++A +VFK++ K GLSCWNS+I+GLA++G G EA++LFS LESS L+P
Sbjct: 269  AIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKP 328

Query: 363  DDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEAL 542
            D VSFIGVLTACNH+GMV+ AK Y  LM+ETY IEP+IKHY CMVDVLGRAGLLEEAE L
Sbjct: 329  DHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEEL 388

Query: 543  ITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILLSNVYASSGRY 722
            I +M +  DAIIWGSLLS+CR++GN+EM ++AAKR+ ELDP++S S+ILLSNVYA+   +
Sbjct: 389  IKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHF 448

Query: 723  EEAMDARRSMQERGTKREPGCSLIEVNDEVHEFVVGGISHPRAIEIHALLD 875
            EEA++ R S++E+   +EPGCSLIEVN EVHEFV GG  HPR+ +I+  LD
Sbjct: 449  EEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHPRSKDIYHALD 499



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 38/286 (13%)
 Frame = +3

Query: 15  AFELFRDMQREG--IKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLTAI 188
           A  LF DM       +P      S+  A A+LG   +G  +H  + K  +E +  +   I
Sbjct: 79  AISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTI 138

Query: 189 IDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGE------------------ 314
           ++MY  CG + EA ++F  ++   +  WN+MIIGLA  G  +                  
Sbjct: 139 LNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWN 198

Query: 315 -------------EAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKY-YLSLMTE 452
                        EA++LFS ++  G++P + + + +L AC   G + + ++ +  ++  
Sbjct: 199 SMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKN 258

Query: 453 TYVIEPTIKHYGCMVDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHGNVEMGE 632
            + +   +     ++D+  + G +++A   +   + K     W SL+      G    G 
Sbjct: 259 NFALNSIV--ITAIIDMYSKCGSIDKA-LQVFKSAPKKGLSCWNSLILGLAMSGR---GN 312

Query: 633 RAAKRLVELDPS----DSGSYILLSNVYASSGRYEEAMDARRSMQE 758
            A +   +L+ S    D  S+I +      +G  + A D    M E
Sbjct: 313 EAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSE 358


>ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355518779|gb|AET00403.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  362 bits (929), Expect = 6e-98
 Identities = 178/292 (60%), Positives = 223/292 (76%), Gaps = 1/292 (0%)
 Frame = +3

Query: 3    KLIEAFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLT 182
            KL+EA ELF  MQ EG + SEF +VSLL A A LGAL+ GKW+H YI +N  ELN IV+T
Sbjct: 243  KLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVT 302

Query: 183  AIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFSDLESSGL-R 359
            AIIDMYCKCG +E A +VF+   + GLSCWNS+IIGLA+NGH  EA + FS LESS L +
Sbjct: 303  AIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLK 362

Query: 360  PDDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEA 539
            PD VSFIGVLTAC H G +N+A+ Y  LM   Y IEP+IKHY C+VDVLG+AGLLEEAE 
Sbjct: 363  PDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEE 422

Query: 540  LITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILLSNVYASSGR 719
            LI  M +K DAIIWGSLLS+CR H NV++  RAA+R+ EL+PSD+  Y+L+SNV+A+S +
Sbjct: 423  LIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNK 482

Query: 720  YEEAMDARRSMQERGTKREPGCSLIEVNDEVHEFVVGGISHPRAIEIHALLD 875
            +EEA++ R  M+E  T++EPGCS IE+  EVHEF+ GG  HP+  EI+ LL+
Sbjct: 483  FEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFIAGGRLHPKTQEIYHLLN 534



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 67/319 (21%), Positives = 120/319 (37%), Gaps = 73/319 (22%)
 Frame = +3

Query: 15   AFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINK--------------- 149
            A  LF DM    I+P      S+  A A+LG    G  +H  + K               
Sbjct: 111  AISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIY 170

Query: 150  -----------------NKIEL---NTIVLTAIIDMYCKCGRIEEAFKVFKASSKIGLSC 269
                              K+EL   + + + ++I  Y KCG I+E+  +F          
Sbjct: 171  MYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVS 230

Query: 270  WNSMIIGLAVNGHGEEAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMT 449
            WNSMI G   NG   EA++LF+ ++  G    + + + +L AC H G +   K+    + 
Sbjct: 231  WNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIK 290

Query: 450  ETYVIEPTIKHYGCMVDVLGRAGLLEEA-------------------------------- 533
              +  E  +     ++D+  + G +E A                                
Sbjct: 291  RNH-FELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAF 349

Query: 534  ---EALITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLV---ELDPSDSGSYILLS 695
                 L ++  +K D++ +  +L+AC+  G +       + ++   E++PS    Y  + 
Sbjct: 350  EFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIK-HYTCIV 408

Query: 696  NVYASSGRYEEAMDARRSM 752
            +V   +G  EEA +  + M
Sbjct: 409  DVLGQAGLLEEAEELIKGM 427


>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
            chloroplastic-like [Glycine max]
          Length = 534

 Score =  362 bits (928), Expect = 8e-98
 Identities = 179/291 (61%), Positives = 228/291 (78%)
 Frame = +3

Query: 3    KLIEAFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLT 182
            +L+EA ELFR MQ E ++PSEF +VSLL+A A LGAL+ G+W+H Y+ +   ELN IVLT
Sbjct: 236  RLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLT 295

Query: 183  AIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFSDLESSGLRP 362
            AIIDMYCKCG I +A +VF+AS   GLSCWNS+IIGLA+NG+  +AI+ FS LE+S L+P
Sbjct: 296  AIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKP 355

Query: 363  DDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEAL 542
            D VSFIGVLTAC + G V +A+ Y SLM   Y IEP+IKHY CMV+VLG+A LLEEAE L
Sbjct: 356  DHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQL 415

Query: 543  ITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILLSNVYASSGRY 722
            I  M +KAD IIWGSLLS+CR HGNVE+ +RAA+R+ EL+PSD+  Y+L+SNV A+S ++
Sbjct: 416  IKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLMSNVQAASNQF 475

Query: 723  EEAMDARRSMQERGTKREPGCSLIEVNDEVHEFVVGGISHPRAIEIHALLD 875
            EEAM+ R  M+ER  ++EPGCS IE+  EVHEF+ GG  HP+A EI+ LL+
Sbjct: 476  EEAMEQRILMRERLAEKEPGCSSIELYGEVHEFLAGGRLHPKAREIYYLLN 526



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
 Frame = +3

Query: 15  AFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLTAIID 194
           A  LF DM    + P      S+  A A+LGA   G  +H  + K  +E +  +   II 
Sbjct: 108 AISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIY 167

Query: 195 MYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGE-------------------- 314
           MY   G + EA +VF     + +   NSMI+GLA  G  +                    
Sbjct: 168 MYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSM 227

Query: 315 -----------EAIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKY 431
                      EA++LF  ++   + P + + + +L+AC H G +   ++
Sbjct: 228 ISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEW 277


>ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525897|gb|EEF28314.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  354 bits (908), Expect = 2e-95
 Identities = 173/291 (59%), Positives = 225/291 (77%)
 Frame = +3

Query: 3    KLIEAFELFRDMQREGIKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLT 182
            +  +A ELF+ MQ E I+PSEF +VSLL A A LGA+ QG+WIH Y+ K K ELN IV+T
Sbjct: 234  RFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVT 293

Query: 183  AIIDMYCKCGRIEEAFKVFKASSKIGLSCWNSMIIGLAVNGHGEEAIQLFSDLESSGLRP 362
            AIIDMY KCG I++A +VF+++ + GLSCWNSMI+GLA+NG   EA+QLFS L+SS LRP
Sbjct: 294  AIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRP 353

Query: 363  DDVSFIGVLTACNHSGMVNEAKYYLSLMTETYVIEPTIKHYGCMVDVLGRAGLLEEAEAL 542
            DDVSFI VLTAC+H+GMV++AK Y  LM + Y I+P IKH+ CMVDVLGRAGLLEEAE L
Sbjct: 354  DDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEEL 413

Query: 543  ITNMSIKADAIIWGSLLSACRDHGNVEMGERAAKRLVELDPSDSGSYILLSNVYASSGRY 722
            I +M +  DAIIWGSLL +C  +GN++M +RAA  L+EL+PS+S S++L++N YA++  +
Sbjct: 414  IRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANAYAAANNF 473

Query: 723  EEAMDARRSMQERGTKREPGCSLIEVNDEVHEFVVGGISHPRAIEIHALLD 875
            EEA+  R +++E    +EPGCS IEV  EVHEFV GG +HP   EI+ +LD
Sbjct: 474  EEALKERLTLKENHIGKEPGCSCIEVGGEVHEFVAGGRAHPEIKEIYRVLD 524



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 34/278 (12%)
 Frame = +3

Query: 51  IKPSEFALVSLLTASARLGALEQGKWIHAYINKNKIELNTIVLTAIIDMYCKCGRIEEAF 230
           ++P      S+  A A+L    +G  +H  + K  +E ++ +   I+ MY  CG   EA 
Sbjct: 118 VQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEAR 177

Query: 231 KVFKAS---------------SKIGLS----------------CWNSMIIGLAVNGHGEE 317
           KVF                  +K GL                  WNSMI G   NG   +
Sbjct: 178 KVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFD 237

Query: 318 AIQLFSDLESSGLRPDDVSFIGVLTACNHSGMVNEAKYYLSLMT-ETYVIEPTIKHYGCM 494
           A++LF  ++   + P + + + +L AC   G + + ++    M  + + + P +     +
Sbjct: 238 ALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIV--VTAI 295

Query: 495 VDVLGRAGLLEEAEALITNMSIKADAIIWGSLLSACRDHG--NVEMGERAAKRLVELDPS 668
           +D+  + G +++A   +   + +     W S++     +G  N  +   +  +  +L P 
Sbjct: 296 IDMYSKCGSIDKA-VQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPD 354

Query: 669 DSGSYILLSNVYASSGRYEEAMDARRSMQERGTKREPG 782
           D  S+I +      +G  ++A D    M+++  K +PG
Sbjct: 355 DV-SFIAVLTACDHTGMVDKAKDYFLLMRDK-YKIKPG 390