BLASTX nr result
ID: Coptis25_contig00015353
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00015353
(1621 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi... 459 e-127
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera] 453 e-125
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,... 435 e-119
ref|XP_002328803.1| predicted protein [Populus trichocarpa] gi|2... 380 e-103
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 368 2e-99
>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like
[Vitis vinifera]
Length = 881
Score = 459 bits (1181), Expect = e-127
Identities = 234/408 (57%), Positives = 306/408 (75%)
Frame = +3
Query: 3 ELVLMSLELNVMLSDDVCVKFISALCKARRVEDGYCIHGQLKRHDKVSYRYTYLDLIHGF 182
ELVL++L+ N+M S KFI ALCKARRV+DGY I G+L + +KV+ + TY ++I GF
Sbjct: 479 ELVLVALDRNIMPSASTYDKFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGF 538
Query: 183 NRANRRDMSSRLLIEMQENGHRPTRKMYRAVICCICTMVNPENCFFKLLEMQLSHQEPTC 362
N NR D+++RLLIE+QE GH PTR ++RAVIC +C M N E F KLLE+QLSHQEP C
Sbjct: 539 NILNRADIAARLLIELQEKGHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNC 598
Query: 363 QLYNLFIDGAGHAKKPDLAREVFEMMARNGIEHNSDTKIFMMQSYLKGERIADALNFYND 542
Q+YN FIDGAGHAKKP+LAREVFEMM R+GI N + I M+QSYLK ERI+DALNF++D
Sbjct: 599 QVYNFFIDGAGHAKKPELAREVFEMMVRSGIVPNLSSDILMLQSYLKNERISDALNFFSD 658
Query: 543 LCKKSKKGNPGRKLNNTMVVGLSKANRPDLALEVLRDLREKGLLPSLESYEELVRSFCTV 722
L K+ K GRKL NTMVVGL KAN+ D+ALE+L+++REKG+ PSLE YEELV+ CT
Sbjct: 659 LQKRRK---VGRKLCNTMVVGLCKANKVDIALEILKEIREKGVTPSLECYEELVKVLCTN 715
Query: 723 ENYDMVVEVVDDLLKTGRKVSSFIGNTLLLHSVRSRELYQAWVQSGNVTTEAFPSGDFTL 902
+ YD+VV ++DDL + GR VSSFIGN LLLHS+++ EL++ WV + + E S + L
Sbjct: 716 KRYDVVVNLIDDLERVGRHVSSFIGNVLLLHSLKTPELFETWVHAKDAHNE-ISSPNLIL 774
Query: 903 GELIGLFSGVYEVNEQLEDLDEVIEQCFPLDNFTYNTLLRRLSMTNRLDSLIELFNKMRK 1082
G+LIG FSG VN+ L+EV++QCFPLD +TYN LLRRL+ ++ +D +ELFN++ +
Sbjct: 775 GQLIGEFSGCIGVNQDFNYLEEVMQQCFPLDLYTYNMLLRRLTRSD-MDLALELFNRICQ 833
Query: 1083 KGYQPNYQTYDIVVQSLCKHGRRNEAMRWVEEIHRMGFDLN*RTRRLM 1226
KGY+PN TYDI+V L KHGR +EA +WVEE+ GF+ T+ L+
Sbjct: 834 KGYEPNRWTYDILVHGLFKHGRTSEANKWVEEMFCKGFEPTEATKLLI 881
>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
Length = 1173
Score = 453 bits (1165), Expect = e-125
Identities = 230/397 (57%), Positives = 299/397 (75%)
Frame = +3
Query: 3 ELVLMSLELNVMLSDDVCVKFISALCKARRVEDGYCIHGQLKRHDKVSYRYTYLDLIHGF 182
ELVL++L+ N+M S KFI ALCKARRV+DGY I G+L + +KV+ + TY ++I GF
Sbjct: 479 ELVLVALDRNIMPSASTYDKFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGF 538
Query: 183 NRANRRDMSSRLLIEMQENGHRPTRKMYRAVICCICTMVNPENCFFKLLEMQLSHQEPTC 362
N NR D+++RLLIE+QE GH PTR ++RAVIC +C M N E F KLLE+QLSHQEP C
Sbjct: 539 NILNRADIAARLLIELQEKGHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNC 598
Query: 363 QLYNLFIDGAGHAKKPDLAREVFEMMARNGIEHNSDTKIFMMQSYLKGERIADALNFYND 542
Q+YN FIDGAGHAKKP+LAREVFEMM R+GI N + I M+QSYLK ERI+DALNF++D
Sbjct: 599 QVYNFFIDGAGHAKKPELAREVFEMMVRSGIVPNLSSDILMLQSYLKNERISDALNFFSD 658
Query: 543 LCKKSKKGNPGRKLNNTMVVGLSKANRPDLALEVLRDLREKGLLPSLESYEELVRSFCTV 722
L K+ K GRKL NTMVVGL KAN+ D+ALE+L+++REKG+ PSLE YEELV+ C
Sbjct: 659 LQKRRK---VGRKLCNTMVVGLCKANKVDIALEILKEIREKGVTPSLECYEELVKVLCKN 715
Query: 723 ENYDMVVEVVDDLLKTGRKVSSFIGNTLLLHSVRSRELYQAWVQSGNVTTEAFPSGDFTL 902
+ YD+VV ++DDL + GR VSSFIGN LLLHS+++ EL++ WV + + E S + L
Sbjct: 716 KRYDVVVNLIDDLERVGRHVSSFIGNVLLLHSLKTPELFETWVHAKDAHNE-ISSPNLIL 774
Query: 903 GELIGLFSGVYEVNEQLEDLDEVIEQCFPLDNFTYNTLLRRLSMTNRLDSLIELFNKMRK 1082
G+LIG FSG VN+ L+EV++QCFPLD +TYN LLRRL+ ++ +D +ELFN++ +
Sbjct: 775 GQLIGEFSGCIGVNQDFNYLEEVMQQCFPLDLYTYNMLLRRLTRSD-MDLALELFNRICQ 833
Query: 1083 KGYQPNYQTYDIVVQSLCKHGRRNEAMRWVEEIHRMG 1193
KGY+PN TYDI+V L KHGR +EA +WVEE+ G
Sbjct: 834 KGYEPNRWTYDILVHGLFKHGRTSEANKWVEEMFCKG 870
>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 895
Score = 435 bits (1118), Expect = e-119
Identities = 220/408 (53%), Positives = 298/408 (73%)
Frame = +3
Query: 3 ELVLMSLELNVMLSDDVCVKFISALCKARRVEDGYCIHGQLKRHDKVSYRYTYLDLIHGF 182
EL +LE N + SD + KFISALCKARR+EDGY IHG+L R ++V+ + TY +LIHGF
Sbjct: 493 ELFFWALERNFIPSDSMYDKFISALCKARRLEDGYLIHGELNRFNRVAKKSTYSNLIHGF 552
Query: 183 NRANRRDMSSRLLIEMQENGHRPTRKMYRAVICCICTMVNPENCFFKLLEMQLSHQEPTC 362
N+ NR D+++RLLIEMQ+ GH P R ++RAVI +C M +PE FF L+MQLS ++P C
Sbjct: 553 NKFNRGDIAARLLIEMQDKGHLPARTLFRAVIRSLCEMDDPETRFFNYLDMQLSRRDPNC 612
Query: 363 QLYNLFIDGAGHAKKPDLAREVFEMMARNGIEHNSDTKIFMMQSYLKGERIADALNFYND 542
Q+YN FIDGAGHAKKPD+AR+VFEMM R+GIE N T I M+QSYLK ERI+DALNF++
Sbjct: 613 QIYNFFIDGAGHAKKPDIARKVFEMMQRSGIEPNQSTNILMLQSYLKSERISDALNFFDA 672
Query: 543 LCKKSKKGNPGRKLNNTMVVGLSKANRPDLALEVLRDLREKGLLPSLESYEELVRSFCTV 722
+ ++ K GRKL NTMVVGL K N+ D AL +++ G++PS+E YE L+ C+
Sbjct: 673 VGQRRK---IGRKLYNTMVVGLCKVNKVDSALSFFLEMQSNGMVPSVECYEVLIMLLCSN 729
Query: 723 ENYDMVVEVVDDLLKTGRKVSSFIGNTLLLHSVRSRELYQAWVQSGNVTTEAFPSGDFTL 902
+ Y + ++ DL K GR+V+SFIGN LLLHS++S ELY AW+Q V E L
Sbjct: 730 KRYSTAITLITDLEKFGRRVTSFIGNILLLHSLKSDELYDAWLQVREVQNET-SLNLLIL 788
Query: 903 GELIGLFSGVYEVNEQLEDLDEVIEQCFPLDNFTYNTLLRRLSMTNRLDSLIELFNKMRK 1082
G++IG F+G ++++Q+++L+EVIEQCFPLD +TYN L+RRLSM+N +D ELF+++ +
Sbjct: 789 GQIIGAFAGRLKLSQQIDNLEEVIEQCFPLDLYTYNMLMRRLSMSN-IDHARELFDRICQ 847
Query: 1083 KGYQPNYQTYDIVVQSLCKHGRRNEAMRWVEEIHRMGFDLN*RTRRLM 1226
KGY+PN+ TYDI+V L K+GR EA RWV+E+ R GF + RT+ LM
Sbjct: 848 KGYEPNHWTYDILVHGLFKNGRIGEARRWVDEMFRKGFSPSGRTKSLM 895
>ref|XP_002328803.1| predicted protein [Populus trichocarpa] gi|222839101|gb|EEE77452.1|
predicted protein [Populus trichocarpa]
Length = 881
Score = 380 bits (976), Expect = e-103
Identities = 203/400 (50%), Positives = 276/400 (69%), Gaps = 1/400 (0%)
Frame = +3
Query: 3 ELVLMSLELNVMLSDDVCVKFISALCKARRVEDGYCIHGQLKRHDKVSYRYTYLDLIHGF 182
ELVL++L N LSD + ISALC+A R EDGY +HG+ R ++V+ TY LIHGF
Sbjct: 489 ELVLLALSKNFRLSDSTYERVISALCRAGRFEDGYVMHGEFNRRNRVATVATYRQLIHGF 548
Query: 183 NRANRRDMSSRLLIEMQENGHRPTRKMYRAVICCICTMVNPENCFFKLLEMQLSHQEPTC 362
+++NR ++SRLLIEMQ+ GH+PTRKM+RAV C+C M NPE FFKLLEMQL +
Sbjct: 549 SKSNRGHVASRLLIEMQDKGHQPTRKMFRAVFRCLCDMENPEMHFFKLLEMQLYRHKFNT 608
Query: 363 QLYNLFIDGAGHAKKPDLAREVFEMMARNGIEHNSDTKIFMMQSYLKGERIADALNFYND 542
++YN FID AG +KKP+LAREVFEMM RNGIE N + +F+++++L+ RI+DALNF
Sbjct: 609 KVYNFFIDEAGRSKKPELAREVFEMMQRNGIEPNVGSHVFILKAFLRNGRISDALNF--- 665
Query: 543 LCKKSKKGNPGRKLNNTMVVGLSKANRPDLALEVLRDLREKGLLPSLESYEELVRSFCTV 722
K + KL MVVGL + R DLAL+ L+ ++ K L+PS+E YE +VR C+
Sbjct: 666 -LKATHDSKMDEKLYRAMVVGLCEVKRTDLALDFLKAMQSKELVPSMECYEAVVRLLCST 724
Query: 723 ENYDMVVEVVDDLLKTGRKVSSFIGNTLLLHSVRSRELYQAWVQSGNVTTEAFPSGDFT- 899
+NYDMVV++++DL K RK++S IGN LLLHS++S ELY++WV+S +V + S D +
Sbjct: 725 KNYDMVVKIINDLKKCQRKLTSLIGNVLLLHSLKSNELYESWVRSRDVQNDT--SSDLSN 782
Query: 900 LGELIGLFSGVYEVNEQLEDLDEVIEQCFPLDNFTYNTLLRRLSMTNRLDSLIELFNKMR 1079
LG LI FSG EV+ LE L+ +IEQCFP D +T N LLR L M + LD + FN++R
Sbjct: 783 LGLLIRAFSGHLEVS--LEYLEGLIEQCFPPDIYTCNMLLRMLCMRD-LDRAQKYFNRLR 839
Query: 1080 KKGYQPNYQTYDIVVQSLCKHGRRNEAMRWVEEIHRMGFD 1199
KG++PN T+DI+ KHGR+ + WV+E+ R GFD
Sbjct: 840 DKGFEPNRWTFDIMAHGHFKHGRQVQGRLWVDEMSRKGFD 879
>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71210-like, partial [Cucumis sativus]
Length = 889
Score = 368 bits (945), Expect = 2e-99
Identities = 202/410 (49%), Positives = 277/410 (67%), Gaps = 2/410 (0%)
Frame = +3
Query: 3 ELVLMSLELNVMLSDDVCVKFISALCKARRVEDGYCIHGQLKRHDKVSYRYTYLDLIHGF 182
ELV+ +LE N M +D KFI ALC+ARRVEDGY IH +L R + V+ R TY LI GF
Sbjct: 479 ELVIFALERNCMPNDSTYDKFIYALCRARRVEDGYLIHCELNRINVVATRSTYFVLIEGF 538
Query: 183 NRANRRDMSSRLLIEMQENGHRPTRKMYRAVICCICTMVNPENCFFKLLEMQLSHQEPTC 362
++ R D+++RLLIEM E GH P R ++R+VI C+ M N E FF LLE+QLS QEP
Sbjct: 539 IKSGRGDIAARLLIEMLEKGHNPPRGLFRSVILCLIEMENMEKQFFNLLELQLSCQEPNS 598
Query: 363 QLYNLFIDGAGHAKKPDLAREVFEMMARNGIEHNSDTKIFMMQSYLKGERIADALNFYND 542
++YN FI AG AKKP+LA EV+ MM RNGI+ N + I +++ YL ERI+DAL F ++
Sbjct: 599 EVYNNFIYAAGRAKKPELANEVYHMMLRNGIQPNLSSDILLLRGYLYSERISDALIFLSN 658
Query: 543 LCKKSKKGNPGRKLNNTMVVGLSKANRPDLALEVLRDLREKGLLPSLESYEELVRSFCTV 722
L S+ GRK++N +VVGL KAN+ +LA + + LR+KG +PS+E YEEL + FC
Sbjct: 659 L---SQTRTIGRKISNVVVVGLCKANKTNLAFDFWKHLRDKGTVPSIECYEELAKHFCQN 715
Query: 723 ENYDMVVEVVDDLLKTGRKVSSFIGNTLLLHSVRSRELYQAWVQS--GNVTTEAFPSGDF 896
E YD VV +++DL K GR ++SF+GN LL S+++++LY+AWV S G V T S
Sbjct: 716 ERYDAVVNLLNDLDKVGRPLTSFLGNVLLYSSLKTQKLYKAWVNSRVGQVET----SQSS 771
Query: 897 TLGELIGLFSGVYEVNEQLEDLDEVIEQCFPLDNFTYNTLLRRLSMTNRLDSLIELFNKM 1076
LG LI FSG V++ +++L+E I +CFPLD +TYN LLR L +T+ ++ ELF+++
Sbjct: 772 MLGLLIKAFSGHIRVSQSIKNLEEAIAKCFPLDIYTYNLLLRTL-ITSDMERAFELFDRL 830
Query: 1077 RKKGYQPNYQTYDIVVQSLCKHGRRNEAMRWVEEIHRMGFDLN*RTRRLM 1226
+KGY PN TYDI+V L K GR EA R +E +H+ GF L T+ L+
Sbjct: 831 CEKGYVPNKWTYDILVHGLFKQGRTVEAKRLLEIMHKKGFSLTECTQALI 880
Score = 60.1 bits (144), Expect = 2e-06
Identities = 68/309 (22%), Positives = 129/309 (41%), Gaps = 4/309 (1%)
Frame = +3
Query: 252 TRKMYRAVICCICTMVNPENCFFKLLEMQLSHQ--EPTCQLYNLFIDGAGHAKKPDLARE 425
TR + A++ I + + F LE + H+ C YN+ + G A KP A
Sbjct: 142 TRATFNAILK-ILSKAKLVSLMFDFLENCVQHKLYHMPC-FYNILVMGYAAAGKPIFALH 199
Query: 426 VFEMMARNGIEHNSDTKIFMMQSYLKGERIADALNFYNDLCKKSKKGNPGRKLNNTMVVG 605
+F M G++ + + ++ S ++ E DA+N + + + +G + M+
Sbjct: 200 LFGKMRFQGLDLDPFSYHVLLNSLVE-ENCFDAVNVI--IKQITLRGFVNEITHYLMLKS 256
Query: 606 LSKANRPDLALEVLRDLREKGLLPSLESYEELVRSFCTVENYDMVVEVVDDLLKTGRKVS 785
K N+ D A L DL + G + + LV +FC N++ ++V+
Sbjct: 257 FCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAFCQSGNFERAWKLVEWFRDLQIVSM 316
Query: 786 SFIGNTLLLHSVRSRELYQA--WVQSGNVTTEAFPSGDFTLGELIGLFSGVYEVNEQLED 959
+ + +R+ +L A ++ S + P F LI + E +
Sbjct: 317 EHVYGVWITELIRAGKLESALQFLNSSKLDGRYIPDV-FRYNMLIHRLLRENRLQEVFDL 375
Query: 960 LDEVIEQCFPLDNFTYNTLLRRLSMTNRLDSLIELFNKMRKKGYQPNYQTYDIVVQSLCK 1139
L E+++Q D T + + L ++ +EL+N + G PN Y+ ++ +LC+
Sbjct: 376 LTEMMDQHISPDKVTMDAAMCFLCKAGMVEVALELYNSNFEFGISPNTMAYNYLINALCR 435
Query: 1140 HGRRNEAMR 1166
G +EA R
Sbjct: 436 DGSTDEAYR 444