BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015252
         (698 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517817.1| Photosystem II 5 kDa protein, chloroplast pr...    61   2e-07
gb|AFK47048.1| unknown [Lotus japonicus]                               59   9e-07
ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|1...    57   4e-06
ref|XP_002277909.1| PREDICTED: photosystem II 5 kDa protein, chl...    57   5e-06

>ref|XP_002517817.1| Photosystem II 5 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223543089|gb|EEF44624.1|
           Photosystem II 5 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 104

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 28/52 (53%), Positives = 32/52 (61%)
 Frame = +3

Query: 393 GRRDMMFXXXXXXXXXXXXXXXXDVPPRGSPEAKKLYAPVCVTMPTARICHK 548
           GRRD+MF                + P  G+PEAKK Y+PVCVTMPTARICHK
Sbjct: 53  GRRDLMFAAVAAAACSVAGVAAAEEPKAGTPEAKKFYSPVCVTMPTARICHK 104


>gb|AFK47048.1| unknown [Lotus japonicus]
          Length = 107

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 28/52 (53%), Positives = 31/52 (59%)
 Frame = +3

Query: 393 GRRDMMFXXXXXXXXXXXXXXXXDVPPRGSPEAKKLYAPVCVTMPTARICHK 548
           GRR++MF                D P  GSPEAKK YAPVCVTMPTAR+C K
Sbjct: 52  GRRNLMFVSAAAAVCSVAGIALADEPKNGSPEAKKKYAPVCVTMPTARVCRK 103


>ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|118487685|gb|ABK95667.1|
           unknown [Populus trichocarpa]
           gi|118488853|gb|ABK96236.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118488867|gb|ABK96243.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|118489821|gb|ABK96710.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118489889|gb|ABK96742.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|222845656|gb|EEE83203.1| predicted protein [Populus
           trichocarpa]
          Length = 105

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +3

Query: 393 GRRDMMFXXXXXXXXXXXXXXXXDVPP-RGSPEAKKLYAPVCVTMPTARICHK 548
           GRRD+MF                D  P RG+PEAKK YAP+CVTMPTARIC K
Sbjct: 53  GRRDLMFAAAAAAAYSIARVAIADEEPERGTPEAKKKYAPICVTMPTARICRK 105


>ref|XP_002277909.1| PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vitis
           vinifera] gi|147792102|emb|CAN66292.1| hypothetical
           protein VITISV_027031 [Vitis vinifera]
          Length = 109

 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 25/52 (48%), Positives = 32/52 (61%)
 Frame = +3

Query: 393 GRRDMMFXXXXXXXXXXXXXXXXDVPPRGSPEAKKLYAPVCVTMPTARICHK 548
           GRR+++F                  P  G+PEAKK+YAP+CVTMPTA+ICHK
Sbjct: 58  GRRELVFAAAAAAVCSVAGIAMAGEPKPGTPEAKKIYAPICVTMPTAKICHK 109