BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015240
         (1564 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   444   e-122
gb|ABK95213.1| unknown [Populus trichocarpa]                          430   e-118
ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|2...   427   e-117
ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus ...   420   e-115
ref|XP_004147630.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   413   e-113

>ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera]
            gi|297736812|emb|CBI26013.3| unnamed protein product
            [Vitis vinifera]
          Length = 307

 Score =  444 bits (1142), Expect = e-122
 Identities = 225/315 (71%), Positives = 250/315 (79%)
 Frame = -3

Query: 1271 MLAASKNIITHLSLRXXXXXXXXXSIFFHLRRRRFSGGESLILEDDYDGSNVIKAAKPGI 1092
            M AAS+ +I+    R         +I    + RRF G ESLI E+       I   KPG+
Sbjct: 1    MSAASRGLIS--GFRFLSIGPRTSAIVASYQFRRF-GSESLIDEEPR-----IIVPKPGV 52

Query: 1091 MTPKSRRTGVIAVKCGMTALWDKWGARIPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQ 912
            M+P S+RTG IAVKCGM+ALWDKWGAR+PITVLW+DDNIV+Q KT +KE   ALQ+GCGQ
Sbjct: 53   MSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKEGLNALQVGCGQ 112

Query: 911  KKEKHLTKPEVGHFRSQGVPMKRKLREFPVTEDALLPVGTPITVRHFVPGQYVDVTGISK 732
            KK KHLTKPEVGHFR+QGVP+KRKLREFPVTEDALLPVGT I VRHFVPGQYVDVTGI++
Sbjct: 113  KKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQYVDVTGITR 172

Query: 731  GKGFQGGMKRWGFRGMPASHGASLSHRSIGSTGQRDAPGRVFXXXXXXXXXXXKQITVKN 552
            GKGFQGGMKRWGF+GMPASHGASLSHRSIGSTGQRDAPG+VF           KQ TVKN
Sbjct: 173  GKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGKQRTVKN 232

Query: 551  VWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDAVYKKPDHSILPFPTYLSAPDGETAELEP 372
            VWVYKIDP RNLMWVRGQVPGAEGNFVFIKDAVYKKPD SILPFPTY  A D +   LEP
Sbjct: 233  VWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDASILPFPTYFPAEDEDPTVLEP 292

Query: 371  LVADLGELDPFMAAD 327
            +VADLG++DPFM AD
Sbjct: 293  IVADLGDIDPFMVAD 307


>gb|ABK95213.1| unknown [Populus trichocarpa]
          Length = 315

 Score =  430 bits (1106), Expect = e-118
 Identities = 209/270 (77%), Positives = 229/270 (84%)
 Frame = -3

Query: 1136 DYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPITVLWVDDNIVTQTKT 957
            +Y   + I  AKPG+MTP S+RTGV+AVKCGMTALWDKWGARIPITVLWVDDNIV+Q KT
Sbjct: 48   EYHQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKT 107

Query: 956  LDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPVTEDALLPVGTPITVR 777
            ++KE   ALQ+GCGQKKEKHLTKPEVGHFR+QGVPMKRKLREFPVTEDALLPVGT + VR
Sbjct: 108  VEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVR 167

Query: 776  HFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIGSTGQRDAPGRVFXXX 597
            HFVPGQ+VDV GI+ GKGFQGGMKR GF+G PASHGASLSHRSIGSTGQRDAPG+VF   
Sbjct: 168  HFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGKVFKGK 227

Query: 596  XXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDAVYKKPDHSILPFP 417
                     Q TVKNVWVYKIDP RNLMWV+GQVPGAEGNFVFIKD+VYKKPD  +LPFP
Sbjct: 228  KMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVYKKPDIQMLPFP 287

Query: 416  TYLSAPDGETAELEPLVADLGELDPFMAAD 327
            TY  A D + A  EPLVADLGE+DPFM AD
Sbjct: 288  TYFGAEDDDNA--EPLVADLGEVDPFMVAD 315


>ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|222864508|gb|EEF01639.1|
            predicted protein [Populus trichocarpa]
          Length = 320

 Score =  427 bits (1098), Expect = e-117
 Identities = 214/285 (75%), Positives = 236/285 (82%), Gaps = 2/285 (0%)
 Frame = -3

Query: 1175 RRFSGGESLI--LEDDYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPI 1002
            RRFS  ++L+   E  Y   + I  AKPG+MTP S+RTGVIAVKCGMTALWDKWGARIPI
Sbjct: 39   RRFSS-DALVDGSEIQYQQPSRIIEAKPGVMTPNSKRTGVIAVKCGMTALWDKWGARIPI 97

Query: 1001 TVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPV 822
            TVLWVDDNIV+Q KT++KE   ALQ+GCGQKKEKHLTKPEVGHFR+QGVPMKRKLREFPV
Sbjct: 98   TVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPV 157

Query: 821  TEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIG 642
            TE+ALLPVGT I VRHFVPGQ+VDV GI+ GKGFQGGMKR GF+G PASHGASLSHRSIG
Sbjct: 158  TENALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIG 217

Query: 641  STGQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIK 462
            STGQRDAPG+VF            Q TVKNVWVYKIDP RNLMWV+GQVPGAEGNFVFIK
Sbjct: 218  STGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIK 277

Query: 461  DAVYKKPDHSILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 327
            D+V+KKPD  ILPFPTY    D + +  EPLVADLGE+DPFM AD
Sbjct: 278  DSVFKKPDIQILPFPTYFETEDDDNS--EPLVADLGEVDPFMVAD 320


>ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus communis]
            gi|223541641|gb|EEF43190.1| 50S ribosomal protein L3,
            putative [Ricinus communis]
          Length = 311

 Score =  420 bits (1080), Expect = e-115
 Identities = 213/288 (73%), Positives = 235/288 (81%), Gaps = 5/288 (1%)
 Frame = -3

Query: 1175 RRFSGGESLILEDDYDGSNV-----IKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGAR 1011
            RRFS  +SLI     DGS +     I  AKPGIMTP S+RTG+IA+KCGMTALWDKWG R
Sbjct: 32   RRFSI-DSLI-----DGSQIQEEARILEAKPGIMTPHSKRTGIIALKCGMTALWDKWGER 85

Query: 1010 IPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLRE 831
            +PITVLWVDDNIVTQ KT++KE   ALQIG G KK KHLTKPEVGHFR+  VP+KRKLRE
Sbjct: 86   VPITVLWVDDNIVTQVKTVEKEGIFALQIGYGHKKAKHLTKPEVGHFRAHNVPLKRKLRE 145

Query: 830  FPVTEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHR 651
            FPVTEDAL+PVGT + VRHFVPGQ+VD+TGI++GKGFQGGMKR GF+GMPA+HGASLSHR
Sbjct: 146  FPVTEDALIPVGTSLGVRHFVPGQFVDITGITRGKGFQGGMKRHGFKGMPATHGASLSHR 205

Query: 650  SIGSTGQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFV 471
            S GSTGQRDAPG+VF            Q TVKNVWVYKIDP RN+MWVRGQVPGAEGNFV
Sbjct: 206  SGGSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPTRNMMWVRGQVPGAEGNFV 265

Query: 470  FIKDAVYKKPDHSILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 327
            FIKDAVYKKPD S LPFPTYL A D ET   EPL+ADLGE+DPFM AD
Sbjct: 266  FIKDAVYKKPDISKLPFPTYLRAEDEETT--EPLIADLGEMDPFMVAD 311


>ref|XP_004147630.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Cucumis
            sativus] gi|449498766|ref|XP_004160627.1| PREDICTED: 50S
            ribosomal protein L3-2, chloroplastic-like [Cucumis
            sativus]
          Length = 328

 Score =  413 bits (1062), Expect = e-113
 Identities = 207/284 (72%), Positives = 231/284 (81%), Gaps = 1/284 (0%)
 Frame = -3

Query: 1175 RRFSGGESLILEDDYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPITV 996
            R FS  +     D    ++ I  AKPG M   S RTGVIAVKCGM+ALWDKWGARIPITV
Sbjct: 45   RAFSTQDLTQASDGSLSASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITV 104

Query: 995  LWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPVTE 816
            LWVDDNIV+Q KT++KE  TALQIGCGQKKEKHL+KPE+GHFR+QGVP+KRKLREFPV++
Sbjct: 105  LWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQ 164

Query: 815  DALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIGST 636
            DALLPVGT I VRHFVPGQYVDVTGIS+GKGFQG MKR GF+GMPASHGASLSHRS GST
Sbjct: 165  DALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGST 224

Query: 635  GQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDA 456
            GQRDAPG+VF           KQ TVKNVW+YKIDP RNLMWV+G +PGAEGNFVFIKDA
Sbjct: 225  GQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDA 284

Query: 455  VYKKPDHS-ILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 327
            VYKK + S ILPFPTY +    +T +LEPLVADLGE+DPFM  D
Sbjct: 285  VYKKLNKSAILPFPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 328