BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015198
         (645 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu...   116   3e-24
ref|XP_002276502.1| PREDICTED: splicing factor U2af small subuni...   112   5e-23
ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni...   112   8e-23
ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|2...   112   8e-23
gb|AAY84879.1| U2AF small subunit [Triticum aestivum]                  91   1e-16

>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
           communis] gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary
           factor, small subunit, putative [Ricinus communis]
          Length = 272

 Score =  116 bits (291), Expect = 3e-24
 Identities = 73/152 (48%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
 Frame = +1

Query: 1   EDQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXXFMHVKEIGR 180
           EDQAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQF            FMHVK IGR
Sbjct: 119 EDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGR 178

Query: 181 DLRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRKPR-SLR 357
           DLRRKLF                                            +   R   R
Sbjct: 179 DLRRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSGDRHDRR 238

Query: 358 HNGS-----SPVREGSEERRARIEQWNREKDE 438
            +GS     SPVREGSEERRARIEQWNRE++E
Sbjct: 239 RHGSPRRSRSPVREGSEERRARIEQWNREREE 270


>ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
           vinifera] gi|359491881|ref|XP_003634337.1| PREDICTED:
           splicing factor U2af small subunit B isoform 2 [Vitis
           vinifera]
          Length = 272

 Score =  112 bits (281), Expect = 5e-23
 Identities = 69/152 (45%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
 Frame = +1

Query: 1   EDQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXXFMHVKEIGR 180
           E+QAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQF            FMHVK IGR
Sbjct: 119 EEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGR 178

Query: 181 DLRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEK------RK 342
           DLRRKLF                                           +K      R+
Sbjct: 179 DLRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDRRRSGDRGDYRGNGRRSGDKHGSDGGRR 238

Query: 343 PRSLRHNGSSPVREGSEERRARIEQWNREKDE 438
                    SPVREGSEERRARIE WNRE++E
Sbjct: 239 RHGSPRRSRSPVREGSEERRARIELWNREREE 270


>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
           sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
           splicing factor U2af small subunit B-like [Cucumis
           sativus]
          Length = 276

 Score =  112 bits (279), Expect = 8e-23
 Identities = 69/156 (44%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
 Frame = +1

Query: 1   EDQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXXFMHVKEIGR 180
           EDQAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQ+            FMHVK IG+
Sbjct: 119 EDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGK 178

Query: 181 DLRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKR------- 339
           DLRRKLF                                           E+        
Sbjct: 179 DLRRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRR 238

Query: 340 ---KPRSLRHNGSSPVREGSEERRARIEQWNREKDE 438
               PR  R      VREGSEERRARIEQWNRE++E
Sbjct: 239 RQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE 274


>ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|222842340|gb|EEE79887.1|
           predicted protein [Populus trichocarpa]
          Length = 273

 Score =  112 bits (279), Expect = 8e-23
 Identities = 72/161 (44%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
 Frame = +1

Query: 1   EDQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXXFMHVKEIGR 180
           EDQAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQF            FMHVK IGR
Sbjct: 119 EDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGR 178

Query: 181 DLRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRKPRSLRH 360
           DLRRKLF                                           ++ + R  R 
Sbjct: 179 DLRRKLF--------GRYRGYRVSRSRSRSVSPRKRERDYDRRERDYRDRDRDRDRDYRG 230

Query: 361 NG---------------SSPVREGSEERRARIEQWNREKDE 438
           NG                S VREGSEERRARIEQWNRE++E
Sbjct: 231 NGRRNDKYDREGGRKRHGSTVREGSEERRARIEQWNREREE 271


>gb|AAY84879.1| U2AF small subunit [Triticum aestivum]
          Length = 314

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 45/67 (67%), Positives = 50/67 (74%)
 Frame = +1

Query: 1   EDQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXXFMHVKEIGR 180
           EDQAA AL ALQGRFYSGRPII  FS VT+FR+ATCRQF            FMHVKEIGR
Sbjct: 119 EDQAAKALQALQGRFYSGRPIIAEFSPVTDFREATCRQFEEHNCNRGGYCNFMHVKEIGR 178

Query: 181 DLRRKLF 201
           DLR++L+
Sbjct: 179 DLRKRLY 185