BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015195
         (2374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              618   e-174
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   567   e-159
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   533   e-148
gb|ACU21153.1| unknown [Glycine max]                                  528   e-147
ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containi...   506   e-140

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  618 bits (1594), Expect = e-174
 Identities = 291/479 (60%), Positives = 377/479 (78%), Gaps = 2/479 (0%)
 Frame = +3

Query: 54   VGSYRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMGDV 233
            + S RNSYDYT +L   +  K +K IHAQII  G+E++ FL AKL+ +Y +  +S++ D 
Sbjct: 1    MASQRNSYDYTYLLQRCKGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDA 60

Query: 234  RRVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVS 413
            R+VFDC+ +RDV +WN II+GYAN GPF EA+++++ MR SG  AN+YT+PFV+KAC   
Sbjct: 61   RKVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAM 120

Query: 414  GARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMI 593
                KG+ IHGH+VK GL+ DLFVGN+LVAFYAKC EI  SR+VFD    KDIV+WNSMI
Sbjct: 121  KDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMI 180

Query: 594  AGYAQNDFPHEAIKLFHQLLQKSTHCV--PDNTTFIGVLPACVQEAAVKEGMWIHCYVIK 767
            +GYA N    +A+ LFH +LQ     V  PD+ T + +LPAC Q AA++EG+WIH YVIK
Sbjct: 181  SGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIK 240

Query: 768  SGMKVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVM 947
            SG+++ A L SGLIAMY NCG L++AR++F R+ ++NI VWNA+++CYGM+G+ ++AL M
Sbjct: 241  SGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKM 300

Query: 948  FSEMVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGR 1127
            FS ++DSG+HPDG+ F+ +LSA SHAG+V +G ELF  MGDYGVE+  EHYA +VD+LGR
Sbjct: 301  FSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVVDILGR 360

Query: 1128 AGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRYIIL 1307
            AG L+EA+E +++MPV+ GKDVYGALLGACRIH NIELAEE AE+LFVLDP NAGRYIIL
Sbjct: 361  AGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYIIL 420

Query: 1308 AKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIFDT 1484
             KMYEDAG+W +AAR+RK L+EK I+K  GCSA+E+ C+LHTFGVED+SHP K QIFDT
Sbjct: 421  VKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGCVLHTFGVEDKSHPFKDQIFDT 479


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523248|gb|AET03702.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  567 bits (1462), Expect = e-159
 Identities = 266/473 (56%), Positives = 359/473 (75%)
 Frame = +3

Query: 66   RNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMGDVRRVF 245
            + S+ YT  LH+ +    +K+ HAQII  G++Q  F+AAKLI +Y +   +++   R+VF
Sbjct: 18   KTSFHYTDQLHHCKTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVF 77

Query: 246  DCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARI 425
            D + ERDV  WN +I+GYAN GPF+EA+ +++ MRLSG   N+YTYPFV+KAC      +
Sbjct: 78   DDLSERDVFCWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCL 137

Query: 426  KGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYA 605
            KGR+IHG++VK GLEFDLFVGN+ VAFYAKC+EIE SRKVFDE + +DIVSWNSM++GY 
Sbjct: 138  KGRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYI 197

Query: 606  QNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIKSGMKVS 785
             N +  EA+ LF  +L+      PDN T + VLPA  ++A +  G WIHCY++K+GMK+ 
Sbjct: 198  ANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLD 257

Query: 786  APLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVMFSEMVD 965
              +  GLI +Y NCG++  A+ +F ++P+RN+ VW+A+++CYGM+G   +AL MF ++V+
Sbjct: 258  PAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVE 317

Query: 966  SGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGRAGQLNE 1145
             G+H DGI F+S+LSACSHAG+ ++GW LF++M  YGV + E HYACMVDLLGRAG L +
Sbjct: 318  LGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVKGEAHYACMVDLLGRAGNLEK 377

Query: 1146 ALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRYIILAKMYED 1325
            A+ELI+SMP++ GK+VYGALLGA RIHKNIELAE AAE+LFVLDP NAGRY+ILA+MYED
Sbjct: 378  AMELIQSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFVLDPNNAGRYVILAQMYED 437

Query: 1326 AGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIFDT 1484
             GRW DAAR+RK++REK+IKK  G S+VE+      FGV DE+HPL  +IF+T
Sbjct: 438  EGRWKDAARLRKIIREKEIKKPIGYSSVELESGHKKFGVNDETHPLTTEIFET 490


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
            mitochondrial-like [Glycine max]
          Length = 503

 Score =  533 bits (1372), Expect = e-148
 Identities = 252/477 (52%), Positives = 350/477 (73%)
 Frame = +3

Query: 48   IRVGSYRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMG 227
            +R   +++S+ YT +L+  +    +K+ HAQ++  G+EQ  F+AA+LI +Y   S+  + 
Sbjct: 12   LRPKLHKDSFYYTELLNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSN--LD 69

Query: 228  DVRRVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACA 407
              R+VFD + E DV   NV+I+ YAN  PF EA+ ++D MR  G   N YTYPFV+KAC 
Sbjct: 70   HARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACG 129

Query: 408  VSGARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNS 587
              GA  KGR+IHGH VK G++ DLFVGN+LVAFYAKC+++E SRKVFDE   +DIVSWNS
Sbjct: 130  AEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNS 189

Query: 588  MIAGYAQNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIK 767
            MI+GY  N +  +AI LF+ +L+  +   PD+ TF+ VLPA  Q A +  G WIHCY++K
Sbjct: 190  MISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVK 249

Query: 768  SGMKVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVM 947
            + M + + + +GLI++Y NCG++  AR +F R+ +R++ VW+A+++CYG +G   +AL +
Sbjct: 250  TRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALAL 309

Query: 948  FSEMVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGR 1127
            F ++V +G+ PDG+ F+ +LSACSHAGL+++GW LF +M  YGV + E HYAC+VDLLGR
Sbjct: 310  FRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGR 369

Query: 1128 AGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRYIIL 1307
            AG L +A+E I+SMP++ GK++YGALLGACRIHKN+ELAE AAE+LFVLDP NAGRY+IL
Sbjct: 370  AGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRYVIL 429

Query: 1308 AKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 1478
            A+MYEDA RW DAARVRKV+++K+IKK  G S+VE+      FGV DE+H    QIF
Sbjct: 430  AQMYEDAERWQDAARVRKVVKDKEIKKPIGYSSVELESGHQKFGVNDETHVHTTQIF 486


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  528 bits (1359), Expect = e-147
 Identities = 250/477 (52%), Positives = 348/477 (72%)
 Frame = +3

Query: 48   IRVGSYRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMG 227
            +R   +++S+ YT +L+  +    +K+ HAQ++  G+EQ  F+AA+LI +Y   S+  + 
Sbjct: 12   LRPKLHKDSFYYTELLNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSN--LD 69

Query: 228  DVRRVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACA 407
              R+VFD + E DV   NV+I+ YAN  PF EA+ + D MR  G   N YTYPFV+KAC 
Sbjct: 70   HARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACG 129

Query: 408  VSGARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNS 587
              GA  KGR+IH H VK G++ DLFVGN+LVAFYAKC+++E SRKVFDE   +DIVSWNS
Sbjct: 130  AEGASKKGRVIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNS 189

Query: 588  MIAGYAQNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIK 767
            M++GY  N +  +AI LF+ +L+  +   PD+ TF+ VLPA  Q A +  G WIHCY++K
Sbjct: 190  MVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVK 249

Query: 768  SGMKVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVM 947
            + M + + + +GLI++Y NCG++  AR +F R+ +R++ VW+A+++CYG +G   +AL +
Sbjct: 250  TRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALAL 309

Query: 948  FSEMVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGR 1127
            F ++V +G+ PDG+ F+ +LSACSHAGL+++GW LF +M  YGV + E HYAC+VDLLGR
Sbjct: 310  FRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGR 369

Query: 1128 AGQLNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRYIIL 1307
            AG L +A+E I+SMP++ GK++YGALLGACRIHKN+ELAE AAE+LFVLDP NAGRY+IL
Sbjct: 370  AGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDNAGRYVIL 429

Query: 1308 AKMYEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIF 1478
            A+MYEDA RW DAARVRKV+++K+IKK  G S+VE+      FGV DE+H    QIF
Sbjct: 430  AQMYEDAERWLDAARVRKVVKDKEIKKPIGYSSVELESGHQKFGVNDETHVHTTQIF 486


>ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Cucumis sativus]
          Length = 480

 Score =  506 bits (1303), Expect = e-140
 Identities = 235/476 (49%), Positives = 331/476 (69%), Gaps = 2/476 (0%)
 Frame = +3

Query: 63   YRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSS--MGDVR 236
            +R+SY + ++L + R  + ++E+HAQI+  G +Q+ F+AAKLI +YVEH +    MG  R
Sbjct: 29   HRDSYGFIKLLGHCRSIRSVQELHAQILVEGLDQNGFVAAKLIGKYVEHDEGEVKMGTAR 88

Query: 237  RVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSG 416
            +VFD ++ RDV +WN                                       AC    
Sbjct: 89   KVFDTLVRRDVFVWN---------------------------------------ACGAMK 109

Query: 417  ARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIA 596
               KG ++HGH+VK GL+ DLFVGN+L+AFY+KC+++ET+RKVFD+  ++DIVSWNSMI 
Sbjct: 110  NSDKGEIVHGHVVKCGLDLDLFVGNALIAFYSKCQDVETARKVFDDMSLRDIVSWNSMIV 169

Query: 597  GYAQNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIKSGM 776
            GY  N    EAI  FH +L     C PD+ T + +LPAC  ++A + G W+H YVIK+G+
Sbjct: 170  GYTLNGKEDEAIMFFHAMLHNQADCTPDSATLVAILPACATKSASQVGFWVHSYVIKTGI 229

Query: 777  KVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVMFSE 956
            +V APL S LI MYGNCGH++ AR++F R+ ++N+ VW+A+++CYGM+G  ++A  MF  
Sbjct: 230  EVGAPLGSCLICMYGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRR 289

Query: 957  MVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGRAGQ 1136
            + ++G+ PDG+ F+++LSACSHAGLV KG E++  M  YG+E+ + HYACMVDLLGRAG 
Sbjct: 290  LEEAGVKPDGLIFLNLLSACSHAGLVAKGHEIYEKMEAYGLERKDNHYACMVDLLGRAGF 349

Query: 1137 LNEALELIESMPVKGGKDVYGALLGACRIHKNIELAEEAAERLFVLDPQNAGRYIILAKM 1316
            L +A+E IE MPV+ GKDVYGALLGACRIH N+ELA+E  E+LF+LDP+ A RY+ LA M
Sbjct: 350  LEQAVEFIEGMPVQAGKDVYGALLGACRIHNNLELAKEVGEKLFILDPEKASRYVTLATM 409

Query: 1317 YEDAGRWTDAARVRKVLREKQIKKQPGCSAVEVNCLLHTFGVEDESHPLKGQIFDT 1484
            YEDAG+W DAA++RK+LR++ I+K  GCS++EV+ + H FG +DE+HPL  +IFDT
Sbjct: 410  YEDAGQWEDAAKLRKLLRDRNIRKPAGCSSIEVDRIHHVFGKKDETHPLTEEIFDT 465