BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015185
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512730.1| pentatricopeptide repeat-containing protein,...    71   2e-10
ref|XP_002332054.1| predicted protein [Populus trichocarpa] gi|2...    62   9e-08
ref|NP_178203.1| pentatricopeptide repeat-containing protein [Ar...    59   6e-07
ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containi...    57   2e-06
ref|XP_002887806.1| predicted protein [Arabidopsis lyrata subsp....    56   4e-06

>ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547741|gb|EEF49233.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 552

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
 Frame = +3

Query: 264 FSATDHQSFIPPSSSRTQFFKHHLFPLKLSTFNLEL-ELDQTNHSTL----VETLRKTKE 428
           F A  H++   P  +  +F     F  +   +  EL E    NH  L    +ETL++   
Sbjct: 44  FYAAFHRTASVPFLNSLRFSGSQSFSSQNQKYPFELFEHRIYNHDPLTQGLLETLKRAAY 103

Query: 429 FTSETEAMDFLDKVEEGVQLDCSLVCSVVWALRNEWELALLGFKWGQKLGCID 587
           F  E EAM  +D    GV+ + +LV SV+W LR +W+LA LGFKWG+K GCID
Sbjct: 104 FPGEAEAMACIDG--SGVKANINLVYSVIWELRKDWKLAFLGFKWGEKWGCID 154


>ref|XP_002332054.1| predicted protein [Populus trichocarpa] gi|222831940|gb|EEE70417.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 29/51 (56%), Positives = 35/51 (68%)
 Frame = +3

Query: 435 SETEAMDFLDKVEEGVQLDCSLVCSVVWALRNEWELALLGFKWGQKLGCID 587
           SE EAM  LD  E G++ + +LV SV+W LR EW LA L FKWG K GC+D
Sbjct: 7   SEAEAMASLD--ESGIRANQNLVYSVIWELREEWRLAFLAFKWGDKWGCVD 55


>ref|NP_178203.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200729|sp|Q9SAH2.1|PP137_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g80880, mitochondrial; Flags: Precursor
           gi|6503300|gb|AAF14676.1|AC011713_24 Contains PF|01535
           Domain of unknown function [Arabidopsis thaliana]
           gi|91806121|gb|ABE65789.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332198342|gb|AEE36463.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 540

 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 33/101 (32%), Positives = 52/101 (51%)
 Frame = +3

Query: 285 SFIPPSSSRTQFFKHHLFPLKLSTFNLELELDQTNHSTLVETLRKTKEFTSETEAMDFLD 464
           S++P  +S  +F    +      TF++ L         L++ +R+  E  SE +AM  L+
Sbjct: 60  SYLPHFASSNRFSTKTIS----ETFDINLTALAPLEKGLIDLIRQVSELESEADAMASLE 115

Query: 465 KVEEGVQLDCSLVCSVVWALRNEWELALLGFKWGQKLGCID 587
             +    L+     S++W LR+EW LA L FKWG+K GC D
Sbjct: 116 --DSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRGCDD 154


>ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
           gi|449509164|ref|XP_004163514.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 26/66 (39%), Positives = 42/66 (63%)
 Frame = +3

Query: 390 HSTLVETLRKTKEFTSETEAMDFLDKVEEGVQLDCSLVCSVVWALRNEWELALLGFKWGQ 569
           ++  +E  ++     SE EA+  LD+ +  V+ D  LV S +W LR++W+ +LL FKWG+
Sbjct: 83  NARFIELFKRVALLPSEVEAVAALDEFD--VKADLDLVYSAIWVLRDDWKSSLLAFKWGE 140

Query: 570 KLGCID 587
           K+G ID
Sbjct: 141 KVGAID 146


>ref|XP_002887806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297333647|gb|EFH64065.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 541

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 27/63 (42%), Positives = 36/63 (57%)
 Frame = +3

Query: 399 LVETLRKTKEFTSETEAMDFLDKVEEGVQLDCSLVCSVVWALRNEWELALLGFKWGQKLG 578
           L++ +R   E  SE +AM  L+  E    L+     S++W LR EW LA L FKWG+K G
Sbjct: 88  LIDLIRHVSELESEADAMASLE--ESSFDLNHDSFYSLIWELREEWRLAFLAFKWGEKRG 145

Query: 579 CID 587
           C D
Sbjct: 146 CDD 148