BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015174
         (1620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...    60   6e-10
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...    54   6e-08
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]     57   6e-08
ref|XP_004171236.1| PREDICTED: probable RNA polymerase II transc...    54   6e-08
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]    60   1e-07

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score = 60.5 bits (145), Expect(2) = 6e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +3

Query: 1494 VLTETEFWATRKELLAADVRKAPKQQMGFKSAMIADVRPLTD 1619
            VLTE EFWATRK+LL  +  +  KQ++GFKSAMI+D++PLTD
Sbjct: 153  VLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTD 194



 Score = 31.2 bits (69), Expect(2) = 6e-10
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 1438 LLQEDSDL*KLHKQFVIS 1491
            LL+EDS+L KLHKQFV+S
Sbjct: 134  LLREDSELQKLHKQFVLS 151


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cucumis sativus]
          Length = 729

 Score = 54.3 bits (129), Expect(2) = 6e-08
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +3

Query: 1494 VLTETEFWATRKELLAADVRKAPKQQMGFKSAMIADVRPLTD 1619
            VLTE+EFWA RK+LL  D  K  KQ +GFKS+M+ D +P++D
Sbjct: 152  VLTESEFWAARKKLLEQDNSKKSKQLIGFKSSMVLDTKPMSD 193



 Score = 30.4 bits (67), Expect(2) = 6e-08
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1441 LQEDSDL*KLHKQFVI 1488
            LQEDS+L KLHKQFVI
Sbjct: 134  LQEDSELQKLHKQFVI 149


>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 56.6 bits (135), Expect(2) = 6e-08
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +3

Query: 1494 VLTETEFWATRKELLAADVRKAPKQQMGFKSAMIADVRPLTD 1619
            +L E+EFWATRK LL  +  K+ KQ+ GFKSAM+ADVRP  D
Sbjct: 158  ILQESEFWATRKNLLDDETNKSSKQKPGFKSAMLADVRPSAD 199



 Score = 28.1 bits (61), Expect(2) = 6e-08
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 1438 LLQEDSDL*KLHKQFVI 1488
            LL+EDS+L KLHK+FV+
Sbjct: 139  LLREDSELQKLHKKFVL 155


>ref|XP_004171236.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-3-like, partial [Cucumis sativus]
          Length = 220

 Score = 54.3 bits (129), Expect(2) = 6e-08
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +3

Query: 1494 VLTETEFWATRKELLAADVRKAPKQQMGFKSAMIADVRPLTD 1619
            VLTE+EFWA RK+LL  D  K  KQ +GFKS+M+ D +P++D
Sbjct: 177  VLTESEFWAARKKLLERDNSKKSKQLIGFKSSMVLDTKPMSD 218



 Score = 30.4 bits (67), Expect(2) = 6e-08
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1441 LQEDSDL*KLHKQFVI 1488
            LQEDS+L KLHKQFVI
Sbjct: 159  LQEDSELQKLHKQFVI 174


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score = 60.5 bits (145), Expect(2) = 1e-07
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +3

Query: 1494 VLTETEFWATRKELLAADVRKAPKQQMGFKSAMIADVRPLTD 1619
            VLTE EFWATRK+LL  +  +  KQ++GFKSAMI+D++PLTD
Sbjct: 196  VLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTD 237



 Score = 23.5 bits (49), Expect(2) = 1e-07
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 1453 SDL*KLHKQFVIS 1491
            S+L KLHKQFV+S
Sbjct: 182  SELQKLHKQFVLS 194