BLASTX nr result
ID: Coptis25_contig00015138
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00015138
(476 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding prote... 99 2e-35
ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|2... 89 8e-33
ref|XP_002532469.1| double-stranded RNA binding protein, putativ... 80 2e-27
ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cuc... 76 2e-23
ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213... 76 2e-23
>ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera] gi|296087161|emb|CBI33535.3| unnamed protein
product [Vitis vinifera]
Length = 333
Score = 98.6 bits (244), Expect(2) = 2e-35
Identities = 48/77 (62%), Positives = 58/77 (75%)
Frame = -2
Query: 232 GCLIIDEDMTYCKSILNEFAVKIGLEMPIYTTTESNGLIPVFTSTLDFHGKTYTGTPARS 53
GC +I ED +CKSILNEFAVK+ LE P YTT + GL+PVF S+L F+G TYTG R+
Sbjct: 97 GCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRN 156
Query: 52 KKEAEQMGARSVIQFIL 2
KKEAEQ+ AR+VI IL
Sbjct: 157 KKEAEQLAARTVILSIL 173
Score = 75.9 bits (185), Expect(2) = 2e-35
Identities = 40/66 (60%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Frame = -1
Query: 476 LPTYTT--ESFGKMPQFRSSVLVDGVNYMSAETFLHKKEAEQNVAKVALESILKKIKDEG 303
LP Y T E F P+FRS+VLVDG Y S TF H+K AEQ+VA++ALE I KKIKDEG
Sbjct: 38 LPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDVARLALEFISKKIKDEG 97
Query: 302 CLIIDE 285
C +I E
Sbjct: 98 CPLIRE 103
>ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1|
predicted protein [Populus trichocarpa]
Length = 452
Score = 89.4 bits (220), Expect(2) = 8e-33
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = -2
Query: 232 GCLIIDEDMTYCKSILNEFAVKIGLEMPIYTTTESNGLIPVFTSTLDFHGKTYTGTPARS 53
GC ++ D +CKSILNEFAVK+ E P Y T +S GL+PVF STL F G +YTG R+
Sbjct: 214 GCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRN 273
Query: 52 KKEAEQMGARSVI 14
KKEAEQ+ AR+VI
Sbjct: 274 KKEAEQLAARAVI 286
Score = 76.3 bits (186), Expect(2) = 8e-33
Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Frame = -1
Query: 476 LPTYTTESFGK--MPQFRSSVLVDGVNYMSAETFLHKKEAEQNVAKVALESILKKIKDEG 303
LP Y T + G MP+FRS+V VDG Y S +TFLH+K AEQ+VA +ALESILK++KDEG
Sbjct: 155 LPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVANLALESILKRVKDEG 214
Query: 302 CLII 291
C ++
Sbjct: 215 CPLL 218
>ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding
protein, putative [Ricinus communis]
Length = 289
Score = 80.1 bits (196), Expect(2) = 2e-27
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = -2
Query: 214 EDMTYCKSILNEFAVKIGLEMPIYTTTESNGLIPVFTSTLDFHGKTYTGTPARSKKEAEQ 35
ED CKSILNE+AVK+ LEMP Y T + GL P+F S+ F+G TY G R+KKEAEQ
Sbjct: 96 EDTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFVSSSVFNGVTYNGDIGRTKKEAEQ 155
Query: 34 MGARSVIQFIL 2
+ AR+ + +L
Sbjct: 156 LAARAAVLSLL 166
Score = 67.0 bits (162), Expect(2) = 2e-27
Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Frame = -1
Query: 476 LPTYTT--ESFGKMPQFRSSVLVDGVNYMSAETFLHKKEAEQNVAKVALESILKKIKDE 306
LP Y T E + P+FRS+VLVDG Y S TF H+KEAEQ+VAK+AL SI +KIKDE
Sbjct: 29 LPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDVAKLALTSITEKIKDE 87
>ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 75.9 bits (185), Expect(2) = 2e-23
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = -2
Query: 226 LIIDEDMTYCKSILNEFAVKIGLEMPIYTTTESNGLIPVFTSTLDFHGKTYTGTPARSKK 47
L++ ED+ CKSIL+E+ K+GLE PIYTT + G + F STL F G YT R+KK
Sbjct: 154 LLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKK 213
Query: 46 EAEQMGARSVI 14
EAEQ+ AR+ I
Sbjct: 214 EAEQLAARAAI 224
Score = 57.8 bits (138), Expect(2) = 2e-23
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = -1
Query: 476 LPTYTT--ESFGKMPQFRSSVLVDGVNYMSAETFLHKKEAEQNVAKVALESILKKIKDEG 303
+P Y T E +P++RS+V+VD V+Y+S TF +++ AEQ+ A+VA E I KK KD+
Sbjct: 93 VPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 152
Query: 302 CLIIDE 285
L++ E
Sbjct: 153 FLLLRE 158
>ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 75.9 bits (185), Expect(2) = 2e-23
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = -2
Query: 226 LIIDEDMTYCKSILNEFAVKIGLEMPIYTTTESNGLIPVFTSTLDFHGKTYTGTPARSKK 47
L++ ED+ CKSIL+E+ K+GLE PIYTT + G + F STL F G YT R+KK
Sbjct: 154 LLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKK 213
Query: 46 EAEQMGARSVI 14
EAEQ+ AR+ I
Sbjct: 214 EAEQLAARAAI 224
Score = 57.8 bits (138), Expect(2) = 2e-23
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = -1
Query: 476 LPTYTT--ESFGKMPQFRSSVLVDGVNYMSAETFLHKKEAEQNVAKVALESILKKIKDEG 303
+P Y T E +P++RS+V+VD V+Y+S TF +++ AEQ+ A+VA E I KK KD+
Sbjct: 93 VPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 152
Query: 302 CLIIDE 285
L++ E
Sbjct: 153 FLLLRE 158