BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015042
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymera...   149   2e-34
emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]   143   1e-32
ref|XP_002515912.1| RNA polymerase II mediator complex subunit, ...   139   2e-31
ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymera...   139   3e-31
gb|EEC80233.1| hypothetical protein OsI_22170 [Oryza sativa Indi...   133   2e-29

>ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
           subunit 6 [Vitis vinifera]
          Length = 258

 Score =  149 bits (377), Expect = 2e-34
 Identities = 71/93 (76%), Positives = 76/93 (81%), Gaps = 4/93 (4%)
 Frame = +2

Query: 32  MAGTPLMQQNQAIGNPVLEG----APAVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 199
           MA TP+   N A GNP  +G     P  PGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL
Sbjct: 1   MASTPMAPPNPAAGNPNFDGNPPAVPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 60

Query: 200 SPFYDFSCNNEQLRVRSIHPLDISHLSKMTGIE 298
           SPFYD++CNNEQLR+RSIHPLD SHLSKMTG E
Sbjct: 61  SPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGTE 93


>emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]
          Length = 253

 Score =  143 bits (361), Expect = 1e-32
 Identities = 68/84 (80%), Positives = 72/84 (85%), Gaps = 4/84 (4%)
 Frame = +2

Query: 59  NQAIGNPVLEG----APAVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCN 226
           N A GNP  +G    AP  PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD++CN
Sbjct: 5   NPAAGNPNFDGNPPAAPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCN 64

Query: 227 NEQLRVRSIHPLDISHLSKMTGIE 298
           NEQLR+RSIHPLD SHLSKMTG E
Sbjct: 65  NEQLRLRSIHPLDTSHLSKMTGTE 88


>ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
           communis] gi|223544817|gb|EEF46332.1| RNA polymerase II
           mediator complex subunit, putative [Ricinus communis]
          Length = 251

 Score =  139 bits (351), Expect = 2e-31
 Identities = 61/76 (80%), Positives = 69/76 (90%)
 Frame = +2

Query: 71  GNPVLEGAPAVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQLRVRS 250
           GNP+    P  PGTDMTGICFRDQLWLN+YPLDRNL+FDYFALSPFYD++CNNEQLR++S
Sbjct: 12  GNPLAPAPPQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRLQS 71

Query: 251 IHPLDISHLSKMTGIE 298
           IHPLD+SHLSKMTG E
Sbjct: 72  IHPLDLSHLSKMTGTE 87


>ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymerase II transcription
           subunit 6-like [Glycine max]
          Length = 252

 Score =  139 bits (349), Expect = 3e-31
 Identities = 66/81 (81%), Positives = 72/81 (88%), Gaps = 3/81 (3%)
 Frame = +2

Query: 65  AIGNPVLEG---APAVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQ 235
           A GN +LEG   AP  PGTDMTGICFRDQLWLNS+PLDRNLVFDYFALSPFYD++CNNEQ
Sbjct: 4   APGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQ 63

Query: 236 LRVRSIHPLDISHLSKMTGIE 298
           LR+RS+HPLDIS LSKMTG E
Sbjct: 64  LRMRSVHPLDISQLSKMTGTE 84


>gb|EEC80233.1| hypothetical protein OsI_22170 [Oryza sativa Indica Group]
          Length = 258

 Score =  133 bits (334), Expect = 2e-29
 Identities = 65/95 (68%), Positives = 71/95 (74%), Gaps = 6/95 (6%)
 Frame = +2

Query: 32  MAGTPLMQQNQ------AIGNPVLEGAPAVPGTDMTGICFRDQLWLNSYPLDRNLVFDYF 193
           M+GTPL    Q      A G       P  PGTDMTGICFRDQLWLN+YPLDRNLVFDYF
Sbjct: 1   MSGTPLPPPAQPPPPPGAAGPDGAAALPPPPGTDMTGICFRDQLWLNTYPLDRNLVFDYF 60

Query: 194 ALSPFYDFSCNNEQLRVRSIHPLDISHLSKMTGIE 298
           ALSPFYD +CNNE LR R IHPLD+SHL+KMTG+E
Sbjct: 61  ALSPFYDLTCNNESLRSRQIHPLDMSHLTKMTGME 95