BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00015021
         (1368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32913.3| unnamed protein product [Vitis vinifera]               67   7e-17
ref|NP_193959.2| F-box protein [Arabidopsis thaliana] gi|3326591...    66   3e-15
ref|NP_190835.1| FBD-associated F-box protein [Arabidopsis thali...    57   6e-15
ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|2...    80   1e-12
ref|NP_974590.1| F-box protein [Arabidopsis thaliana] gi|1222138...    57   2e-12

>emb|CBI32913.3| unnamed protein product [Vitis vinifera]
          Length = 348

 Score = 66.6 bits (161), Expect(2) = 7e-17
 Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
 Frame = -2

Query: 1271 SSSRETTSGISHLPEQILSHILSFLPTQEAVQTSLLSREWRYIYYSLSNLWFDQIGFKVN 1092
            S   E+   IS+LP+++L HILSFLPT+ AV TS+LS+ WRY++ S+  L FD   +   
Sbjct: 3    SEYEESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWL-- 60

Query: 1091 NPDKL----NLLLEFRNFVNRTLLRQDGSDIEKFNL 996
            NP  L      ++ F+NFV+  L   + S I+KF L
Sbjct: 61   NPSTLVELEERIIMFQNFVDGVLRHSEVSCIKKFRL 96



 Score = 48.1 bits (113), Expect(2) = 7e-17
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
 Frame = -3

Query: 919 LKLPTVVCFPQLKCLTLDFVTFYDDCSTENFFSTSCPVLEDLTIDYCRLYNFNTLTISGL 740
           L +PT V  P LK L L  V + DD S +   S  CPVLE+L I+     N   + +S  
Sbjct: 131 LDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLS-GCPVLEELVIEREERDNQWVVNVSNP 189

Query: 739 RLKALNI---TNRISH----------IGICCPNLQYVRYHGVKPPNISTQTLSSLLAAKF 599
            LK L I   T+  +H          + +  PNL+Y+        +   + L SL+ A  
Sbjct: 190 SLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFI 249

Query: 598 ELHQPS 581
           ++ Q S
Sbjct: 250 DVEQDS 255


>ref|NP_193959.2| F-box protein [Arabidopsis thaliana] gi|332659185|gb|AEE84585.1|
           F-box protein [Arabidopsis thaliana]
          Length = 415

 Score = 66.2 bits (160), Expect(2) = 3e-15
 Identities = 79/286 (27%), Positives = 123/286 (43%), Gaps = 19/286 (6%)
 Frame = -3

Query: 958 IFTLRVLS----LRHVHLKLPTVVCFPQLKCLTLDFVTFYD-DCSTENFFSTSCPVLEDL 794
           IFT + L      R  +  +P  V  P LK L L  + F + DC       ++CPVLE+L
Sbjct: 121 IFTCKTLVELKLARGFYAMVPDYVSLPSLKTLFLSSIWFCNRDCCPLGRLLSACPVLEEL 180

Query: 793 TI--------DYCRLYNFNTLTISGLRLKALNITNRISH----IGICCPNLQYVRYHGVK 650
           TI        ++CR       T+S   LK L IT+   +    I I  P+L Y+ Y  + 
Sbjct: 181 TIIGGCWQHIEFCR-------TVSSSTLKKLTITSSFHYEYWGITIDTPSLAYLEYSDLV 233

Query: 649 PPNISTQTLSSLLAAKFELHQPSNILQT-IITELQNVVTLSLCCSCIEFINKNTEFFAWH 473
           P +     L SL+ AK  L   S+   T +I  L+NV  L L      + ++    F   
Sbjct: 234 PRHFPFVNLESLVEAKLALDLCSDSNPTNLIKGLRNVEVLELSSG---YTSQILYDFREA 290

Query: 472 PTSCPSLKRLQLEMLRKKDYV-EVLSLLLGSYTKLQALRISFKTYYQSTDNICINVKQRT 296
                 L RL ++   +  Y+  +L +LL    KL+ L I             ++  +  
Sbjct: 291 IPVLSKLFRLSIKSNSRHYYIWNLLPILLEKSPKLETLVIKGP----------LSADRYE 340

Query: 295 QELATGDLLKLLTEVEIDDFGGDENELHIVRYLLKNANLMEKLKIR 158
           +E      +K+L   EI ++GG   EL  + + LK    +E +K+R
Sbjct: 341 REYGLSCPVKVL---EITEYGGKYEELEQMEHFLKKLPCLELVKVR 383



 Score = 42.7 bits (99), Expect(2) = 3e-15
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = -2

Query: 1244 ISHLPEQILSHILSFLPTQEAVQTSLLSREWRYIYYSLSNLWFDQIGFKVNNPDKLNLLL 1065
            I+ L + I+ HILS L  +EA  TS+LS  WRY++    NL  D    +V   D      
Sbjct: 4    INGLSDDIICHILSLLSFKEATSTSVLSMRWRYLFAFRPNLCLDD--QEVGGGD------ 55

Query: 1064 EFRNFVNRTLLRQDGSDIEKFNLS--VSVD 981
             F +FV+R L+      I + ++   +S+D
Sbjct: 56   SFIDFVDRVLVVTGNFPIRRISIKCRMSID 85


>ref|NP_190835.1| FBD-associated F-box protein [Arabidopsis thaliana]
           gi|7669941|emb|CAB89228.1| putative protein [Arabidopsis
           thaliana] gi|332645457|gb|AEE78978.1| FBD-associated
           F-box protein [Arabidopsis thaliana]
          Length = 384

 Score = 57.0 bits (136), Expect(2) = 6e-15
 Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 11/276 (3%)
 Frame = -3

Query: 964 NVIFTLRVLSLRHVHLKLPTVVCFPQLKCLTLDFVTFYDDCSTENFFSTSCPVLEDLTID 785
           N + TL+++    +H+ +P  V    L+ L LD V++ D+ S  N  S SCP+LE+L + 
Sbjct: 101 NTLETLKLIL--GIHVDIPCPVLLKSLRTLHLDSVSYKDEESIRNLLS-SCPILENLVV- 156

Query: 784 YCRLYNFNTLTISGLRLKALNITN-----RISHIGICCPNLQYVRYHGVKPPNISTQTLS 620
           Y   YN     I    LK L I +           I  P L+Y+R  G+           
Sbjct: 157 YEYWYNVVNFDIEVPSLKRLEICDVLHKKEFRRYTINVPCLKYLRIEGLNKDFELCLNAP 216

Query: 619 SLLAAKFELHQPSNILQTIITELQNVVTLSLCCSCIEFINKNTEFFAWHPTSCPSLKRLQ 440
            L+ A F                    T        +F+            S  S KRL 
Sbjct: 217 ELVEAYF--------------------TKGSLIIADKFLG-----------SLKSAKRLS 245

Query: 439 LEML------RKKDYVEVLSLLLGSYTKLQALRISFKTYYQSTDNICINVKQRTQELATG 278
           L++L      R++++  +L+++L S  KLQ L++   T   S DN+        + +   
Sbjct: 246 LDILALKMHTRREEWWNLLTVMLDSSPKLQVLKLIDHTQDVSKDNVVSEKWNEPKYVPEC 305

Query: 277 DLLKLLTEVEIDDFGGDENELHIVRYLLKNANLMEK 170
            L  L T V I      E E  +  Y+L+NA  ++K
Sbjct: 306 LLSHLETFVWIRYDWEREEEKEVATYILRNARWLKK 341



 Score = 51.2 bits (121), Expect(2) = 6e-15
 Identities = 22/54 (40%), Positives = 37/54 (68%)
 Frame = -2

Query: 1244 ISHLPEQILSHILSFLPTQEAVQTSLLSREWRYIYYSLSNLWFDQIGFKVNNPD 1083
            ++ LPE ++  ILSFLPT+  + TS+LS++WR ++  + NL FD   +++N  D
Sbjct: 12   MNQLPEDLILRILSFLPTELVIATSVLSKQWRSLWKLVPNLEFDSDDYEINPVD 65


>ref|XP_002316601.1| predicted protein [Populus trichocarpa] gi|222859666|gb|EEE97213.1|
            predicted protein [Populus trichocarpa]
          Length = 420

 Score = 80.1 bits (196), Expect = 1e-12
 Identities = 43/89 (48%), Positives = 58/89 (65%)
 Frame = -2

Query: 1244 ISHLPEQILSHILSFLPTQEAVQTSLLSREWRYIYYSLSNLWFDQIGFKVNNPDKLNLLL 1065
            I+ LP+ +L HILSFL T++AV+TS+LSR+W +++ SLSNL F Q  FK           
Sbjct: 40   INDLPDALLQHILSFLETKDAVRTSILSRKWEHLWKSLSNLEFHQCYFKAKRK------- 92

Query: 1064 EFRNFVNRTLLRQDGSDIEKFNLSVSVDE 978
             F N V R LL +D S+IEKF LS  +D+
Sbjct: 93   IFMNSVERVLLLRDSSNIEKFTLSCGIDD 121


>ref|NP_974590.1| F-box protein [Arabidopsis thaliana]
           gi|122213848|sp|Q3E7K7.1|FB243_ARATH RecName: Full=F-box
           protein At4g22280 gi|115311447|gb|ABI93904.1| At4g22280
           [Arabidopsis thaliana] gi|332659186|gb|AEE84586.1| F-box
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 56.6 bits (135), Expect(2) = 2e-12
 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
 Frame = -3

Query: 958 IFTLRVLS----LRHVHLKLPTVVCFPQLKCLTLDFVTFYD-DCSTENFFSTSCPVLEDL 794
           IFT + L      R  +  +P  V  P LK L L  + F + DC       ++CPVLE+L
Sbjct: 121 IFTCKTLVELKLARGFYAMVPDYVSLPSLKTLFLSSIWFCNRDCCPLGRLLSACPVLEEL 180

Query: 793 T--------IDYCRLYNFNTLTISGLRLKALNITNRISH----IGICCPNLQYVRYHGVK 650
           T        I++CR       T+S   LK L IT+   +    I I  P+L Y+ Y  + 
Sbjct: 181 TIIGGCWQHIEFCR-------TVSSSTLKKLTITSSFHYEYWGITIDTPSLAYLEYSDLV 233

Query: 649 PPNISTQTLSSLLAAKFELHQPSNILQT-IITELQNVVTLSL 527
           P +     L SL+ AK  L   S+   T +I  L+NV  L L
Sbjct: 234 PRHFPFVNLESLVEAKLALDLCSDSNPTNLIKGLRNVEVLEL 275



 Score = 42.7 bits (99), Expect(2) = 2e-12
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = -2

Query: 1244 ISHLPEQILSHILSFLPTQEAVQTSLLSREWRYIYYSLSNLWFDQIGFKVNNPDKLNLLL 1065
            I+ L + I+ HILS L  +EA  TS+LS  WRY++    NL  D    +V   D      
Sbjct: 4    INGLSDDIICHILSLLSFKEATSTSVLSMRWRYLFAFRPNLCLDD--QEVGGGD------ 55

Query: 1064 EFRNFVNRTLLRQDGSDIEKFNLS--VSVD 981
             F +FV+R L+      I + ++   +S+D
Sbjct: 56   SFIDFVDRVLVVTGNFPIRRISIKCRMSID 85