BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014937
         (1363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containi...   359   1e-96
ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|1...   343   6e-92
ref|XP_002527905.1| pentatricopeptide repeat-containing protein,...   338   3e-90
ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containi...   334   4e-89
ref|XP_002886593.1| pentatricopeptide repeat-containing protein ...   317   3e-84

>ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
            [Vitis vinifera]
          Length = 489

 Score =  359 bits (921), Expect = 1e-96
 Identities = 177/240 (73%), Positives = 199/240 (82%)
 Frame = -2

Query: 1362 ALKELENRNACRDLSAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMIQVLV 1183
            ALKELE RNACRDL+A+Q+LITLYGR GNLLEV+RVWRSLRLAFPK AN+SYLNMIQVLV
Sbjct: 250  ALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLV 309

Query: 1182 NLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAKPNVK 1003
            NLKD+PGAEKCFREWES  S YDIR+ANALIGAYAK+GLLEKAE LKE ARR GAKPN K
Sbjct: 310  NLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAK 369

Query: 1002 TWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFEQARDVEGAE 823
            TWEIF+ YHLK      AVDCV N IS GRGDG+KWVP   ++   M HFEQ +DV+GAE
Sbjct: 370  TWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFEQEKDVDGAE 429

Query: 822  SFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEVVCVD 643
             FLE LK   +  G +VFESLIR YAAAG+TSP +RRRLKMENV+VS++ KKLLE V V+
Sbjct: 430  GFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCKKLLEEVSVE 489


>ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|118487894|gb|ABK95769.1|
            unknown [Populus trichocarpa] gi|222873242|gb|EEF10373.1|
            predicted protein [Populus trichocarpa]
          Length = 490

 Score =  343 bits (880), Expect = 6e-92
 Identities = 167/240 (69%), Positives = 198/240 (82%)
 Frame = -2

Query: 1362 ALKELENRNACRDLSAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMIQVLV 1183
            ALKELE  NA +DL A+Q+LITLYGRTG L+EV+R+WRSLRLAFPK AN+SYLNMIQVLV
Sbjct: 251  ALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTANISYLNMIQVLV 310

Query: 1182 NLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAKPNVK 1003
            NLKDVPGAEKCFREWES  STYDIR+AN +I AYAKEGL++KAE LKERARR GAKPN K
Sbjct: 311  NLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLVDKAEELKERARRRGAKPNSK 370

Query: 1002 TWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFEQARDVEGAE 823
            TWEIF DY+LK  +  L VDC+ N +S GRG+G+KWVP   +V +LM+HFEQ +DV+GAE
Sbjct: 371  TWEIFCDYYLKNGDVKLGVDCIANAVSAGRGNGQKWVPSPVIVGSLMAHFEQQKDVDGAE 430

Query: 822  SFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEVVCVD 643
              +E LKK  D    +VFESLIRTYAAAG+ S  +RRRLKMENV+VS+  +KLLE +CV+
Sbjct: 431  DLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKMENVEVSDDCQKLLEAICVE 490


>ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532680|gb|EEF34462.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 490

 Score =  338 bits (866), Expect = 3e-90
 Identities = 167/239 (69%), Positives = 197/239 (82%)
 Frame = -2

Query: 1359 LKELENRNACRDLSAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMIQVLVN 1180
            LKELE RN  RD SA+Q+LITLYGR GNL E++R+WRSLRLAFPK +N+SYLNMIQVLVN
Sbjct: 252  LKELEKRNVHRDHSAFQFLITLYGRIGNLHELYRIWRSLRLAFPKTSNISYLNMIQVLVN 311

Query: 1179 LKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAKPNVKT 1000
            LKD+PGAEKCFREWES  S YDIR+AN LI AYAK+GLLEKAE LKERA   GAKPN KT
Sbjct: 312  LKDLPGAEKCFREWESNCSGYDIRVANVLIKAYAKKGLLEKAEELKERAIGRGAKPNAKT 371

Query: 999  WEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFEQARDVEGAES 820
            WEIF DY+ +  +  L+V+C+ N IS GRGDG+KW+P   VV + M+HFEQ +DV+GAE 
Sbjct: 372  WEIFSDYYFENGDIKLSVECLANAISKGRGDGQKWIPSPEVVASFMAHFEQQKDVDGAEG 431

Query: 819  FLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEVVCVD 643
            F+E LKK  D   A+VFESLIRTYAAAG+TS  LRRRLKMENV+VSEA +KLLE++CV+
Sbjct: 432  FIEILKKATDDVEANVFESLIRTYAAAGRTSQVLRRRLKMENVEVSEAGQKLLEMICVE 490


>ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like
            [Glycine max]
          Length = 490

 Score =  334 bits (856), Expect = 4e-89
 Identities = 167/240 (69%), Positives = 195/240 (81%)
 Frame = -2

Query: 1362 ALKELENRNACRDLSAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMIQVLV 1183
            ALKELE RNA +DL+AYQ+LITLYGRTGNL EV+RVWRSLRLAFPK AN+SYLNMIQVLV
Sbjct: 251  ALKELEKRNAFKDLTAYQFLITLYGRTGNLYEVYRVWRSLRLAFPKTANISYLNMIQVLV 310

Query: 1182 NLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAKPNVK 1003
            NLKD+PGAEKCFREWE    TYDIR+AN LI AY K  +LEKAE LKERARR GAKPN K
Sbjct: 311  NLKDLPGAEKCFREWECGCPTYDIRVANVLIRAYVKLDMLEKAEELKERARRRGAKPNAK 370

Query: 1002 TWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFEQARDVEGAE 823
            T EIFMDY+L K +  LAVD +   IS+GRG+G KWVP   ++  +M HFEQ +DV+GAE
Sbjct: 371  TLEIFMDYYLLKGDFKLAVDYLNEAISMGRGNGEKWVPSSRIISIMMRHFEQEKDVDGAE 430

Query: 822  SFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEVVCVD 643
             FLE LKK  +  G +VFESLIRTYAAAG+ S +++RRLKMENV+VSE T+KLLE + V+
Sbjct: 431  EFLEILKKSVESPGVEVFESLIRTYAAAGRISSAMQRRLKMENVEVSEGTQKLLEAISVE 490


>ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297332434|gb|EFH62852.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 491

 Score =  317 bits (813), Expect = 3e-84
 Identities = 153/237 (64%), Positives = 192/237 (81%)
 Frame = -2

Query: 1362 ALKELENRNACRDLSAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMIQVLV 1183
            AL+ELE +N  RD +AYQ+LITLYGR G L EV+R+WRSLRLA PK +N++YLNMIQVLV
Sbjct: 251  ALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAMPKTSNVAYLNMIQVLV 310

Query: 1182 NLKDVPGAEKCFREWESVRSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAKPNVK 1003
             L D+PGAE  F+EW++  STYDIRI N LIGAYAKEGL+EKA+ LKE+A R G K N K
Sbjct: 311  KLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAKEGLIEKAKELKEKAPRRGGKANAK 370

Query: 1002 TWEIFMDYHLKKSNTSLAVDCVTNGISIGRGDGRKWVPPQNVVQTLMSHFEQARDVEGAE 823
            TWEIFMDY++K  + + A++C++  +SIG+GDG KW+P Q  V+TLMS+FEQ +DV GAE
Sbjct: 371  TWEIFMDYYVKSGDMAHALECMSKAVSIGKGDGGKWIPSQETVRTLMSYFEQKKDVNGAE 430

Query: 822  SFLETLKKVEDVFGADVFESLIRTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEVV 652
            + LE LK   D  GA++FESLIRTYAAAGK+ P++RRRLKMENV+V+E TKKLL+ V
Sbjct: 431  NLLEILKNGTDNIGAEIFESLIRTYAAAGKSHPAMRRRLKMENVEVNEVTKKLLDEV 487