BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014824
         (775 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III s...   241   1e-61
ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III s...   241   1e-61
ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polype...   210   3e-52
dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]    208   9e-52
ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycin...   208   9e-52

>ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
           vinifera] gi|297735498|emb|CBI17938.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  241 bits (616), Expect = 1e-61
 Identities = 118/192 (61%), Positives = 141/192 (73%), Gaps = 6/192 (3%)
 Frame = -1

Query: 748 MFFLSLIEHTXXXXXXXXXXXLDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIF 569
           MF+LSLIEHT           L++AIKGELE+LFLDKVIANLGLC+SVYDIR+IDGGF+F
Sbjct: 1   MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60

Query: 568 PGDGASTFTVNFRLIMFRPFXXXXXXXXXXXSDAKGLRLSLGFFKDITLPAHLLPNPSKF 389
           PGDGAST+TV FRL+MFRPF           SDA GLRLSLGFF DI +P HL+PNP   
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120

Query: 388 GEDGK------WTWDFNGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITAS 227
             + +      W WD+   + PI+  DEIRF+V S+ YPPIPVEQ K++KPFAPMVI  S
Sbjct: 121 EPNPEKKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGS 180

Query: 226 IDFDGLGPISWW 191
           +D+DGLGP+SWW
Sbjct: 181 LDYDGLGPVSWW 192


>ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
           vinifera] gi|296086693|emb|CBI32328.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  241 bits (615), Expect = 1e-61
 Identities = 117/192 (60%), Positives = 141/192 (73%), Gaps = 6/192 (3%)
 Frame = -1

Query: 748 MFFLSLIEHTXXXXXXXXXXXLDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIF 569
           MFFLSLIEHT           L++AIKGELE+LFLDKV+ANLGLC+SVYDIR+IDGGF+F
Sbjct: 1   MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60

Query: 568 PGDGASTFTVNFRLIMFRPFXXXXXXXXXXXSDAKGLRLSLGFFKDITLPAHLLPNPSKF 389
           PGDGAST+TV FRL+MFRPF           SDA GL+LSLGFF DI +P HL+PNP   
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120

Query: 388 GEDGK------WTWDFNGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITAS 227
             D +      W WD+   + PI+  DEIRF+V S+ YPPIPVEQ K++KPFAPM+I  S
Sbjct: 121 EPDPENKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGS 180

Query: 226 IDFDGLGPISWW 191
           +D+DGLGP+SWW
Sbjct: 181 LDYDGLGPVSWW 192


>ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
           [Ricinus communis] gi|223539824|gb|EEF41404.1|
           DNA-directed RNA polymerase III 25 kD polypeptide,
           putative [Ricinus communis]
          Length = 194

 Score =  210 bits (534), Expect = 3e-52
 Identities = 108/196 (55%), Positives = 135/196 (68%), Gaps = 10/196 (5%)
 Frame = -1

Query: 748 MFFLSLIEHTXXXXXXXXXXXLDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIF 569
           MF+LS IEHT           L  A+K ELE +FLDKVIANLGLC+SVYD+ +IDGGFIF
Sbjct: 1   MFYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIF 60

Query: 568 PGDGASTFTVNFRLIMFRPFXXXXXXXXXXXSDAKGLRLSLGFFKDITLPAHLLPNPSKF 389
           PGDGAST+TV FR+++FRPF           S+  GLRLSLGFF DI +P+H LP PS  
Sbjct: 61  PGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKPSYS 120

Query: 388 GEDGK------WTWDF----NGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMV 239
            +D +      W W+F    N  E  I+  DEI+F+V S++YPP+P+EQ++  KPFAPMV
Sbjct: 121 QQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLEQQE--KPFAPMV 178

Query: 238 ITASIDFDGLGPISWW 191
           IT SID +GLGP+SWW
Sbjct: 179 ITGSIDDEGLGPVSWW 194


>dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 210

 Score =  208 bits (530), Expect = 9e-52
 Identities = 106/187 (56%), Positives = 129/187 (68%), Gaps = 1/187 (0%)
 Frame = -1

Query: 748 MFFLSLIEHTXXXXXXXXXXXLDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIF 569
           MF LS IEH            L  AIK ELE LFLDKV+ANLGLCVSVYDIR ++GGFIF
Sbjct: 1   MFVLSQIEHNLPMPPHLLNRPLVDAIKSELERLFLDKVVANLGLCVSVYDIRKVEGGFIF 60

Query: 568 PGDGASTFTVNFRLIMFRPFXXXXXXXXXXXSDAKGLRLSLGFFKDITLPAHLLPNPSKF 389
           PG+G ST+TV+FRL+MFRPF            D KGL++SL FF DI +P HL+   +  
Sbjct: 61  PGEGCSTYTVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQFGTVR 120

Query: 388 GEDGKWTWDF-NGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITASIDFDG 212
           GEDG+W     +G ELP++ +DEIRF V SI+YPPIPVEQ++D +PFAPM I  SI  DG
Sbjct: 121 GEDGRWALKTEDGDELPLDIDDEIRFLVSSIKYPPIPVEQKEDDRPFAPMQINGSIKGDG 180

Query: 211 LGPISWW 191
           LG ++WW
Sbjct: 181 LGLLAWW 187


>ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
           gi|255644932|gb|ACU22966.1| unknown [Glycine max]
          Length = 214

 Score =  208 bits (530), Expect = 9e-52
 Identities = 108/206 (52%), Positives = 132/206 (64%), Gaps = 20/206 (9%)
 Frame = -1

Query: 748 MFFLSLIEHTXXXXXXXXXXXLDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIF 569
           MF+LS IEH            + +AI  ELE LFLDKVIANLGLC+SVYDIR+IDGGFIF
Sbjct: 1   MFYLSKIEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIF 60

Query: 568 PGDGASTFTVNFRLIMFRPFXXXXXXXXXXXSDAKGLRLSLGFFKDITLPAHLLPNPSKF 389
           PGDGA T+TV F LIMFRPF           SDA GLRL++GFF DI +PA  LP+P+ F
Sbjct: 61  PGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFFDDIYIPASRLPDPNHF 120

Query: 388 GE--------------------DGKWTWDFNGTELPIEKEDEIRFKVHSIRYPPIPVEQE 269
            E                     G W WD+N  E PI+  D  +F+V ++ YP IPVEQ 
Sbjct: 121 VETEQKKRVFSGQESTTNSSSKKGVWYWDYNEQEYPIQDTDVTKFRVTNVSYPQIPVEQP 180

Query: 268 KDAKPFAPMVITASIDFDGLGPISWW 191
           K++KPFAPM+I+ ++D DGLGP+SWW
Sbjct: 181 KESKPFAPMLISGAMDDDGLGPVSWW 206