BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014795
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...   191   4e-47
emb|CBI17752.3| unnamed protein product [Vitis vinifera]              191   4e-47
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...   164   9e-39
ref|XP_002513116.1| pentatricopeptide repeat-containing protein,...   162   3e-38

>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Vitis vinifera]
          Length = 1294

 Score =  191 bits (486), Expect = 4e-47
 Identities = 90/152 (59%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
 Frame = +3

Query: 42  KPETSTTNNLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPSSTHKQKSPKPFEFTKWDP 221
           +P+    +  YF+YGHRKPSQNRPTV GGLFSNR TLNP P +   Q     F    WDP
Sbjct: 543 QPQPPKPHKFYFFYGHRKPSQNRPTVHGGLFSNRTTLNPKPPTL--QNPTTHFNLQNWDP 600

Query: 222 NSFQSTI--PTKTQSEKYFSTAQSLSPLARYICDSFRKHKHWCPTIITDLDKLRRVTPKL 395
           +S ++    P+KT  E++F  A++LSP+ARYICDSFRKH++W P ++ DL+KLRRVTP L
Sbjct: 601 DSPKALAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLNKLRRVTPVL 660

Query: 396 VTEVLKV*TDPRLSSKFFHWAGKQKGFRHDFA 491
           V EVLKV TDP + SKFFHWAGKQKG++H+FA
Sbjct: 661 VAEVLKVQTDPVICSKFFHWAGKQKGYKHNFA 692


>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  191 bits (486), Expect = 4e-47
 Identities = 90/152 (59%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
 Frame = +3

Query: 42  KPETSTTNNLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPSSTHKQKSPKPFEFTKWDP 221
           +P+    +  YF+YGHRKPSQNRPTV GGLFSNR TLNP P +   Q     F    WDP
Sbjct: 4   QPQPPKPHKFYFFYGHRKPSQNRPTVHGGLFSNRTTLNPKPPTL--QNPTTHFNLQNWDP 61

Query: 222 NSFQSTI--PTKTQSEKYFSTAQSLSPLARYICDSFRKHKHWCPTIITDLDKLRRVTPKL 395
           +S ++    P+KT  E++F  A++LSP+ARYICDSFRKH++W P ++ DL+KLRRVTP L
Sbjct: 62  DSPKALAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLNKLRRVTPVL 121

Query: 396 VTEVLKV*TDPRLSSKFFHWAGKQKGFRHDFA 491
           V EVLKV TDP + SKFFHWAGKQKG++H+FA
Sbjct: 122 VAEVLKVQTDPVICSKFFHWAGKQKGYKHNFA 153


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score =  166 bits (420), Expect = 2e-39
 Identities = 81/146 (55%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
 Frame = +3

Query: 60  TNNLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPSSTHKQKSPKPFEFTKWDPNSFQST 239
           TN  YF+YGHR PSQNRPTV+GGLFSNR+TLNPNPS    + + KPF    WDP+   + 
Sbjct: 24  TNKFYFFYGHRNPSQNRPTVRGGLFSNRQTLNPNPSQP--KPTTKPFNIKNWDPHFLSN- 80

Query: 240 IPTKTQSEKYFSTAQ-SLSPLARYICDSFRKHKH-WCPTIITDLDKLRRVTPKLVTEVLK 413
            P    S    S+A   LSP+AR+I D+FR++ + WCP +  +L KLRR+TP LV EVLK
Sbjct: 81  -PNSNPSPSTLSSASLRLSPIARFIVDAFRRNDNKWCPNVAAELSKLRRITPNLVAEVLK 139

Query: 414 V*TDPRLSSKFFHWAGKQKGFRHDFA 491
           V T+  L+SKFFHWAG Q+G+ H+FA
Sbjct: 140 VQTNHTLASKFFHWAGSQRGYHHNFA 165


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487951|gb|AES69154.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 767

 Score =  164 bits (414), Expect = 9e-39
 Identities = 89/160 (55%), Positives = 111/160 (69%), Gaps = 9/160 (5%)
 Frame = +3

Query: 39  LKPETSTT-NNLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPSSTHKQKSPKP---FEF 206
           + P+T T  N  YF+YGHRKPSQNRPTV+GGLFSNRKTL P      K KS KP   F+ 
Sbjct: 1   MPPQTPTPPNKFYFFYGHRKPSQNRPTVRGGLFSNRKTLTPP-----KPKSTKPTNSFQI 55

Query: 207 TKWDPNSF-QSTIPTKTQS---EKYFSTAQSLSPLARYICDSFRKHKH-WCPTIITDLDK 371
            KWDP+   Q   P+ + S   E  FS +  LSP+AR+I D+FRK+ + W P ++T+L+K
Sbjct: 56  QKWDPHFLSQPNSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNK 115

Query: 372 LRRVTPKLVTEVLKV*TDPRLSSKFFHWAGKQKGFRHDFA 491
           LRRVTP LV EVLKV T+P L+ KFFHW  KQKG+ H+FA
Sbjct: 116 LRRVTPTLVAEVLKVQTNPTLAFKFFHWVEKQKGYHHNFA 155


>ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548127|gb|EEF49619.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1128

 Score =  162 bits (409), Expect = 3e-38
 Identities = 80/154 (51%), Positives = 108/154 (70%), Gaps = 3/154 (1%)
 Frame = +3

Query: 39  LKPETSTTNNLYFYYGHRKPSQNRPTVQGGLFSNRKTLNPNPSSTHKQKSPKPFEFTKWD 218
           + P++      YF+YGHRKPSQNRP V+GGLFSNR+ + P  S   K K+P PF+   WD
Sbjct: 444 MPPQSLPPPKPYFFYGHRKPSQNRPVVRGGLFSNRQIIKPQNSI--KPKNPVPFDLQNWD 501

Query: 219 PNSF--QSTIPTKTQSEKYFSTAQSLSPLARYICDSFRKHKH-WCPTIITDLDKLRRVTP 389
           P +    S  P  +Q+    + +Q LSP++R+I D+FRK+ + W P ++ +L KLRRVTP
Sbjct: 502 PQNPCPSSKSPPLSQNHSLSTLSQRLSPISRFIRDAFRKNSNKWGPPVVAELRKLRRVTP 561

Query: 390 KLVTEVLKV*TDPRLSSKFFHWAGKQKGFRHDFA 491
            LV+EVLKV  DP L+S+FFHWAGKQKG+RH+FA
Sbjct: 562 DLVSEVLKVENDPHLASQFFHWAGKQKGYRHNFA 595