BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014772
         (218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13
ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13
ref|XP_002328355.1| predicted protein [Populus trichocarpa] gi|2...    78   8e-13
ref|XP_003591732.1| Pentatricopeptide repeat-containing protein ...    77   1e-12

>ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 35/72 (48%), Positives = 54/72 (75%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LIHG C   + + +  LF++M+ + + PD+VTF++L+D L KEG+ +EA ++ E+M QRG
Sbjct: 278 LIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRG 337

Query: 183 IMPNVITYTSLI 218
           I+PN+ITY SLI
Sbjct: 338 IVPNLITYNSLI 349



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI GLC   +LE A  LFE + +  + PDVVT+ I++    K G+   A  +FE M + G
Sbjct: 488 LIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENG 547

Query: 183 IMPNVITYTSLI 218
             P++I Y +L+
Sbjct: 548 CTPDIIAYNTLL 559



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRS------IAPDVVTFTILVDALGKEGRTSEALQVFE 164
           LI GLC    +  A+ L ++ML  +        P V+T++I++D L K GR  EA ++FE
Sbjct: 202 LIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFE 261

Query: 165 LMFQRGIMPNVITYTSLI 218
            M  +G++P+VI+Y++LI
Sbjct: 262 EMKAQGMIPDVISYSTLI 279



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           L+ GL  I+      SL+ +M    ++PD+ T +IL + L    R SEAL     + +RG
Sbjct: 97  LLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRG 156

Query: 183 IMPNVITYTSLI 218
            +PNV+TYT+LI
Sbjct: 157 YIPNVVTYTTLI 168


>ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 37/72 (51%), Positives = 51/72 (70%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI+G C +  L+ A SL  +M  ++I PDV TF IL+DALGKEG+  EA+ +FE M  + 
Sbjct: 274 LIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKN 333

Query: 183 IMPNVITYTSLI 218
           + PN++TYTSLI
Sbjct: 334 MFPNIVTYTSLI 345



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/72 (45%), Positives = 45/72 (62%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI GLC  H LE A++L + M ++ I PDV ++TIL+DAL K GR   A Q F+ +  +G
Sbjct: 344 LIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKG 403

Query: 183 IMPNVITYTSLI 218
              NV TY  +I
Sbjct: 404 YHLNVRTYNVMI 415



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI+GLC   + +    L   +   S+ PDVV +T ++  L K  R  +A  ++  M  +G
Sbjct: 204 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKG 263

Query: 183 IMPNVITYTSLI 218
           I PNV TY +LI
Sbjct: 264 ISPNVFTYNTLI 275


>ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 37/72 (51%), Positives = 50/72 (69%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LIHG C +  L+ A SL  +M  ++I PDV TF IL+DAL KEG+  EA+ +FE M  + 
Sbjct: 242 LIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKN 301

Query: 183 IMPNVITYTSLI 218
           + PN++TYTSLI
Sbjct: 302 MFPNIVTYTSLI 313



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/72 (44%), Positives = 45/72 (62%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI GLC  H LE A++L + M ++ I P+V ++TIL+DAL K GR   A Q F+ +  +G
Sbjct: 312 LIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKG 371

Query: 183 IMPNVITYTSLI 218
              NV TY  +I
Sbjct: 372 YHLNVRTYNVMI 383


>ref|XP_002328355.1| predicted protein [Populus trichocarpa] gi|222838070|gb|EEE76435.1|
           predicted protein [Populus trichocarpa]
          Length = 608

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 36/72 (50%), Positives = 49/72 (68%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           ++HG C + QL  A  LF++M+ R + PD VT TILVD L KEG  SEA  VFE M ++G
Sbjct: 269 MVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKG 328

Query: 183 IMPNVITYTSLI 218
           + PN+ TY +L+
Sbjct: 329 VEPNISTYNALM 340



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 29/72 (40%), Positives = 50/72 (69%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI+GLC+  +++ AV LF +M++R   P+V+++  +++ L K G TS A+ VF+ M Q G
Sbjct: 164 LINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNG 223

Query: 183 IMPNVITYTSLI 218
             P+V+TY ++I
Sbjct: 224 CKPDVVTYNTII 235



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 47/72 (65%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI+G C   +++ A SL  +M  +++ PD VT++ L+  L + GR  EAL +F+ M   G
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 183 IMPNVITYTSLI 218
           ++PN++TY+ L+
Sbjct: 434 LLPNLVTYSILL 445



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/72 (40%), Positives = 45/72 (62%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI+ LC ++ ++ AVS+   M K  I P   TF  L++ L  EG+  EA+++F  M +RG
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 183 IMPNVITYTSLI 218
             PNVI+Y ++I
Sbjct: 189 HEPNVISYNTII 200



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/72 (36%), Positives = 42/72 (58%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           +I+GLC       AV +F+ M +    PDVVT+  ++D+L K+   ++A++    M  RG
Sbjct: 199 IINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRG 258

Query: 183 IMPNVITYTSLI 218
           I PNV TY  ++
Sbjct: 259 IPPNVFTYNCMV 270



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 24/72 (33%), Positives = 47/72 (65%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           L+ GLC   + + A+++F++M    + P++VT++IL+D   K G   EAL++ + M ++ 
Sbjct: 409 LMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK 468

Query: 183 IMPNVITYTSLI 218
           + PN++ +T LI
Sbjct: 469 LEPNIVHHTILI 480


>ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480780|gb|AES61983.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 344

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 37/72 (51%), Positives = 50/72 (69%)
 Frame = +3

Query: 3   LIHGLCSIHQLEGAVSLFEDMLKRSIAPDVVTFTILVDALGKEGRTSEALQVFELMFQRG 182
           LI+G C I QL+ A  LF  M+ ++I P V TFTILVD L KEG+  EA  V  +M + G
Sbjct: 58  LIYGFCIIGQLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDG 117

Query: 183 IMPNVITYTSLI 218
           ++PNV+TYTS++
Sbjct: 118 VLPNVVTYTSIM 129