BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014706
         (1156 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron sp...   384   e-104
ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|2...   376   e-102
ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus c...   365   2e-98
ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycin...   362   1e-97
ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron sp...   350   4e-94

>ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2,
            chloroplastic [Vitis vinifera]
            gi|296087264|emb|CBI33638.3| unnamed protein product
            [Vitis vinifera]
          Length = 246

 Score =  384 bits (985), Expect = e-104
 Identities = 184/246 (74%), Positives = 212/246 (86%), Gaps = 1/246 (0%)
 Frame = -2

Query: 1056 MLHSVSAPNPCISIPSRRSIH-LTSRRLVATKIRVSASLPDVDTVKVEYTPWLIVGLGNP 880
            ML++VS P+  IS       H    RRL   ++ VSASLPD + +KVEYTPWLIVGLGNP
Sbjct: 1    MLYAVSGPSTSISCRRSLDYHGFRRRRLAPARLCVSASLPDANGIKVEYTPWLIVGLGNP 60

Query: 879  GNKYHGTRHNVGFEMIDRISEEEGIKLNTIQSKALMGIGSIGEVPVLLAKSQAYMNYSGE 700
            GNKYHGTRHNVGFEMIDRIS+EEGI LNTIQSKAL+GIGSIGEVP+LLAK QAYMN+SGE
Sbjct: 61   GNKYHGTRHNVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 120

Query: 699  SVGPLAAYYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGYHNGVKSVIDHLDGCKAFPRL 520
            SVGPLAAYYQVPLRHIL++YDEM+LPNGV+RL P+GGHGYHNG+K+V+ HLDGC+ FPRL
Sbjct: 121  SVGPLAAYYQVPLRHILVVYDEMNLPNGVLRLAPRGGHGYHNGLKNVMGHLDGCREFPRL 180

Query: 519  CIGIGNPPGTMDRKAYLLQKFSSEERKQVDIALEQAVEAVRNLLLKGFDDNITKFNLGQK 340
            CIGIGNPPGTMD KAYLLQKFS EERKQ+D A EQ + AVRNL+L GF+ + T+FNLGQK
Sbjct: 181  CIGIGNPPGTMDMKAYLLQKFSFEERKQIDAAQEQGIGAVRNLVLNGFNHSTTRFNLGQK 240

Query: 339  YKFHRV 322
            YK+H+V
Sbjct: 241  YKYHKV 246


>ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1|
            predicted protein [Populus trichocarpa]
          Length = 244

 Score =  376 bits (966), Expect = e-102
 Identities = 180/246 (73%), Positives = 213/246 (86%), Gaps = 1/246 (0%)
 Frame = -2

Query: 1056 MLHSVSAPNPCISIPSRRSIHLTSRRLVATKIRVSASLPD-VDTVKVEYTPWLIVGLGNP 880
            ML++VS P  CIS P  RS     R LV+ ++ V ASLPD  + VKVEYTPWLIVGLGNP
Sbjct: 1    MLYAVSTPRTCISCP--RSSRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGLGNP 58

Query: 879  GNKYHGTRHNVGFEMIDRISEEEGIKLNTIQSKALMGIGSIGEVPVLLAKSQAYMNYSGE 700
            G KYHGTRHNVGFEMIDRI++ EG+ +NTIQSKAL+GIG IGEVP+LLAK QAYMN+SGE
Sbjct: 59   GTKYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNFSGE 118

Query: 699  SVGPLAAYYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGYHNGVKSVIDHLDGCKAFPRL 520
            SVGPLAA+Y++PLRHILLIYDEM+LPNG++R+QPKGGHG+HNGVKSV+DHLDGC+ FPRL
Sbjct: 119  SVGPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREFPRL 178

Query: 519  CIGIGNPPGTMDRKAYLLQKFSSEERKQVDIALEQAVEAVRNLLLKGFDDNITKFNLGQK 340
            CIGIGNPPGTMD KA+LLQKFS  ER+Q+D +LEQ VEA+R L+L GF + IT+FNLGQK
Sbjct: 179  CIGIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNLGQK 238

Query: 339  YKFHRV 322
            YK+H+V
Sbjct: 239  YKYHKV 244


>ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]
            gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase,
            putative [Ricinus communis]
          Length = 253

 Score =  365 bits (936), Expect = 2e-98
 Identities = 177/255 (69%), Positives = 210/255 (82%), Gaps = 10/255 (3%)
 Frame = -2

Query: 1056 MLHSVSAPNPCISIPSRRSIHLTSRRLVATKIRVSASLPDVDT--VKVEYTPWLIVGLGN 883
            ML++VS PN CIS P  R+     R L +T++ +  SLP+      K+EYTPWLIVGLGN
Sbjct: 1    MLYAVSTPNTCISCP--RNSFFRPRHLASTRLSIRVSLPENGNGVAKIEYTPWLIVGLGN 58

Query: 882  PGNKYHGTRHNV--------GFEMIDRISEEEGIKLNTIQSKALMGIGSIGEVPVLLAKS 727
            PGNKYHGTRHNV        GFEMID+I++ E + +NTIQSKAL+GIG I EVP+LL K 
Sbjct: 59   PGNKYHGTRHNVTNASLDLVGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKP 118

Query: 726  QAYMNYSGESVGPLAAYYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGYHNGVKSVIDHL 547
            QAYMN+SGESVGPLAA+YQVPLRHILLIYDEMSLPNGVMRLQPKGGHG+HNGVKSV++HL
Sbjct: 119  QAYMNFSGESVGPLAAHYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHL 178

Query: 546  DGCKAFPRLCIGIGNPPGTMDRKAYLLQKFSSEERKQVDIALEQAVEAVRNLLLKGFDDN 367
            DGC+ FPRLCIGIGNPPGTMD +A+LLQKFSS ER+Q+D AL Q ++AVR L+L GF+ N
Sbjct: 179  DGCREFPRLCIGIGNPPGTMDMRAFLLQKFSSTEREQIDAALGQGIDAVRTLVLSGFNQN 238

Query: 366  ITKFNLGQKYKFHRV 322
            IT+FNLGQKYK+H+V
Sbjct: 239  ITRFNLGQKYKYHKV 253


>ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycine max]
            gi|255645504|gb|ACU23247.1| unknown [Glycine max]
          Length = 244

 Score =  362 bits (929), Expect = 1e-97
 Identities = 172/245 (70%), Positives = 205/245 (83%)
 Frame = -2

Query: 1056 MLHSVSAPNPCISIPSRRSIHLTSRRLVATKIRVSASLPDVDTVKVEYTPWLIVGLGNPG 877
            MLH+VSAP+ C+S P       +S +     +R S S    +  KVEYTPWLI+GLGNPG
Sbjct: 1    MLHAVSAPSFCLSYPGNLHYPPSSVQKTCFSVRCSVSQTK-NGAKVEYTPWLIIGLGNPG 59

Query: 876  NKYHGTRHNVGFEMIDRISEEEGIKLNTIQSKALMGIGSIGEVPVLLAKSQAYMNYSGES 697
            NKYHGTRHNVGFE+ID +S  EGI++NTIQSKAL+GIGSIGEVP+LLAK Q YMN+SGES
Sbjct: 60   NKYHGTRHNVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGES 119

Query: 696  VGPLAAYYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGYHNGVKSVIDHLDGCKAFPRLC 517
            VGPLAAYYQVPLRHILL++DE SLPNGV+RLQPKGGHG+HNG+K+V+ HLDGC AFPRL 
Sbjct: 120  VGPLAAYYQVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLA 179

Query: 516  IGIGNPPGTMDRKAYLLQKFSSEERKQVDIALEQAVEAVRNLLLKGFDDNITKFNLGQKY 337
            +GIGNPPGTMD +AYLLQKFS EERKQ+D +LEQAV AVR ++L GFD ++ +FNLGQKY
Sbjct: 180  VGIGNPPGTMDLRAYLLQKFSVEERKQIDASLEQAVAAVRTVVLNGFDQHVNRFNLGQKY 239

Query: 336  KFHRV 322
            K+H+V
Sbjct: 240  KYHKV 244


>ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator
           CRS2-B, chloroplastic-like [Cucumis sativus]
           gi|449519774|ref|XP_004166909.1| PREDICTED:
           chloroplastic group IIB intron splicing facilitator
           CRS2-B, chloroplastic-like [Cucumis sativus]
          Length = 249

 Score =  350 bits (898), Expect = 4e-94
 Identities = 166/225 (73%), Positives = 195/225 (86%), Gaps = 2/225 (0%)
 Frame = -2

Query: 990 TSRRLVATKIRVSASLPDVDT--VKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDRISE 817
           +++ LV+T++ V AS PD D+  +KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMID I++
Sbjct: 25  STKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQ 84

Query: 816 EEGIKLNTIQSKALMGIGSIGEVPVLLAKSQAYMNYSGESVGPLAAYYQVPLRHILLIYD 637
            +GI +NTIQSKAL+GIGSIGEVP+LLAK Q YMN+ GESVGPLAA+YQ+PLRH+LL YD
Sbjct: 85  AQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLTYD 144

Query: 636 EMSLPNGVMRLQPKGGHGYHNGVKSVIDHLDGCKAFPRLCIGIGNPPGTMDRKAYLLQKF 457
           EM+LPNGV+RLQPK GHG+HNGVKSV+ HLDG + FPRLCIGIGNPPGTMD KA+LLQKF
Sbjct: 145 EMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKF 204

Query: 456 SSEERKQVDIALEQAVEAVRNLLLKGFDDNITKFNLGQKYKFHRV 322
           SS ERKQ+D ALEQ VEAVR L L GF   + +FNL QKYK+H+V
Sbjct: 205 SSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249