BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014693
         (1159 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays] gi|4...   465   e-129
ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]...   462   e-128
gb|ACF88009.1| unknown [Zea mays] gi|223975603|gb|ACN31989.1| un...   462   e-128
ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-l...   462   e-128
ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|2...   461   e-127

>gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
            gi|413935080|gb|AFW69631.1| exosome complex exonuclease
            RRP42 isoform 1 [Zea mays] gi|413935081|gb|AFW69632.1|
            exosome complex exonuclease RRP42 isoform 2 [Zea mays]
            gi|413935082|gb|AFW69633.1| exosome complex exonuclease
            RRP42 isoform 3 [Zea mays] gi|413935083|gb|AFW69634.1|
            exosome complex exonuclease RRP42 isoform 4 [Zea mays]
          Length = 287

 Score =  465 bits (1197), Expect = e-129
 Identities = 230/278 (82%), Positives = 258/278 (92%)
 Frame = -2

Query: 1146 MVGLSGGEKHYIQGGIAQDLRTDGRTRLAYRQISVQTGVIPQANGSARVKLGGTDVIASV 967
            MVGLS GEKH+I+GGIAQDLRTDGR RL +R +SVQTGVIPQANGSARV+LG TD+IASV
Sbjct: 1    MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASV 60

Query: 966  KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 787
            KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EE SAELS++LQRC LGGKSGAGA
Sbjct: 61   KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 786  GINLSSLIVMEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 607
             I+LSSLIV++GK+CWDLYIDGLV+SSDGNLLDAL  AIK ALS+TGIPKVNV+V A++D
Sbjct: 121  AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 606  EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 427
            EEPEVD+SDEEFLQFDTSGVPVI+TLTKVGRHYI DATSEEESQMSSA+S+SVNRHG IC
Sbjct: 181  EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 426  GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 313
            GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDSEI+
Sbjct: 241  GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIA 278


>ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]
            gi|195636336|gb|ACG37636.1| exosome complex exonuclease
            RRP42 [Zea mays]
          Length = 287

 Score =  462 bits (1190), Expect = e-128
 Identities = 228/278 (82%), Positives = 258/278 (92%)
 Frame = -2

Query: 1146 MVGLSGGEKHYIQGGIAQDLRTDGRTRLAYRQISVQTGVIPQANGSARVKLGGTDVIASV 967
            MVGLS GEKH+I+GGIAQD+RTDGR RL +R +SVQTGVIPQANGSARV+LG T++IASV
Sbjct: 1    MVGLSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASV 60

Query: 966  KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 787
            KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EE SAELS++LQRC LGGKSGAGA
Sbjct: 61   KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 786  GINLSSLIVMEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 607
             I+LSSLIV++GK+CWDLYIDGLV+SSDGNLLDAL  AIK ALS+TGIPKVNV+V A++D
Sbjct: 121  AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 606  EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 427
            EEPEVD+SDEEFLQFDTSGVPVI+TLTKVGRHYI DATSEEESQMSSA+S+SVNRHG IC
Sbjct: 181  EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 426  GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 313
            GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDSEI+
Sbjct: 241  GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIA 278


>gb|ACF88009.1| unknown [Zea mays] gi|223975603|gb|ACN31989.1| unknown [Zea mays]
            gi|413935071|gb|AFW69622.1| exosome complex exonuclease
            RRP42 isoform 1 [Zea mays] gi|413935072|gb|AFW69623.1|
            exosome complex exonuclease RRP42 isoform 2 [Zea mays]
            gi|413935073|gb|AFW69624.1| exosome complex exonuclease
            RRP42 isoform 3 [Zea mays]
          Length = 287

 Score =  462 bits (1190), Expect = e-128
 Identities = 228/278 (82%), Positives = 258/278 (92%)
 Frame = -2

Query: 1146 MVGLSGGEKHYIQGGIAQDLRTDGRTRLAYRQISVQTGVIPQANGSARVKLGGTDVIASV 967
            MVGLS GEKH+I+GGIAQD+RTDGR RL +R +SVQTGVIPQANGSARV+LG T++IASV
Sbjct: 1    MVGLSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASV 60

Query: 966  KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 787
            KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EE SAELS++LQRC LGGKSGAGA
Sbjct: 61   KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 786  GINLSSLIVMEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 607
             I+LSSLIV++GK+CWDLYIDGLV+SSDGNLLDAL  AIK ALS+TGIPKVNV+V A++D
Sbjct: 121  AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 606  EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 427
            EEPEVD+SDEEFLQFDTSGVPVI+TLTKVGRHYI DATSEEESQMSSA+S+SVNRHG IC
Sbjct: 181  EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 426  GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 313
            GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDSEI+
Sbjct: 241  GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIA 278


>ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
          Length = 286

 Score =  462 bits (1188), Expect = e-128
 Identities = 234/278 (84%), Positives = 252/278 (90%)
 Frame = -2

Query: 1146 MVGLSGGEKHYIQGGIAQDLRTDGRTRLAYRQISVQTGVIPQANGSARVKLGGTDVIASV 967
            MVGLS GE H+IQGGIAQDLR DGR RL YR ISV+TGVIPQ NGSARV++G TDVIASV
Sbjct: 1    MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 966  KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 787
            KAELGKP+ L PDKGKV+IYVDCS TA P FEGRGG+E +AELS ALQRC LGGKSGAGA
Sbjct: 61   KAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGA 120

Query: 786  GINLSSLIVMEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 607
            GI+LSSLIV+EGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP+V VA G S D
Sbjct: 121  GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 606  EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 427
            E PEVD+SDEEFLQFDTS VPVIVTLTKVGRHYI DATSEEESQMSSA+SISVNR GHIC
Sbjct: 181  EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRQGHIC 240

Query: 426  GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 313
            G+TKRGG GLDPS+ILDMISVAKHVSEQLI KLDSEI+
Sbjct: 241  GITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIA 278


>ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|222861967|gb|EEE99509.1|
            predicted protein [Populus trichocarpa]
          Length = 287

 Score =  461 bits (1186), Expect = e-127
 Identities = 232/278 (83%), Positives = 256/278 (92%)
 Frame = -2

Query: 1146 MVGLSGGEKHYIQGGIAQDLRTDGRTRLAYRQISVQTGVIPQANGSARVKLGGTDVIASV 967
            MVGLS GEKH+IQGGI Q+LR+DGR R AYR IS++TGVIPQANGSAR+++G T+VIASV
Sbjct: 1    MVGLSLGEKHFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASV 60

Query: 966  KAELGKPNYLYPDKGKVAIYVDCSPTAAPMFEGRGGEEFSAELSLALQRCFLGGKSGAGA 787
            KAELG+PN L PDKGKVAI+VDCSP A PMFEGRGGEE SAELS+ALQRC LGGKSGAGA
Sbjct: 61   KAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGA 120

Query: 786  GINLSSLIVMEGKMCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAD 607
            GI+LSSLIV EGK+CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP+V VA GAS D
Sbjct: 121  GIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGD 180

Query: 606  EEPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIADATSEEESQMSSALSISVNRHGHIC 427
            E+PEVDISDEEF+QFDTSGVPVIVTLTKVGRHYI DATSEEESQMSSA+S+S++R G IC
Sbjct: 181  EQPEVDISDEEFMQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQIC 240

Query: 426  GLTKRGGAGLDPSVILDMISVAKHVSEQLIAKLDSEIS 313
            GL+KRG AGLDPSVI DMISVA+H+SEQLI KLDSEIS
Sbjct: 241  GLSKRGSAGLDPSVISDMISVARHISEQLINKLDSEIS 278