BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014651
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   114   8e-24
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  114 bits (285), Expect = 8e-24
 Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 2/122 (1%)
 Frame = -3

Query: 364 KHPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKET 185
           K P+KA DFFNWVC +NGFKPS P+Y+LMLRIL  +++MK FW  + KM   G Y D+ET
Sbjct: 104 KDPHKAWDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEET 163

Query: 184 YWTLIVDFKQAKLTRDTVTLNETYMEM--RISLDAIVKGVVDVVLGSDWNDDVKKKLGKM 11
           Y T++  F++ ++  D V     +  M    ++D++VK VV VV  ++W+++V+K+L  M
Sbjct: 164 YLTILGVFRKERMDSDAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGM 223

Query: 10  NV 5
            +
Sbjct: 224 GI 225



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/85 (35%), Positives = 47/85 (55%)
 Frame = -3

Query: 361 HPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETY 182
           +P KAL FFNW      ++ +   YN + R+LG ++++ EFW  V +M   G  +D +TY
Sbjct: 242 YPLKALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTY 301

Query: 181 WTLIVDFKQAKLTRDTVTLNETYME 107
             +   F++ KL  D V L E  M+
Sbjct: 302 IKISRQFQKNKLMGDAVKLYEFMMD 326


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  107 bits (266), Expect = 1e-21
 Identities = 51/123 (41%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
 Frame = -3

Query: 364 KHPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKET 185
           K+P KA  FFNWVC K  F+PS  VY+L++RIL  ++TMK+FW  +  M  +G ++D+ET
Sbjct: 105 KNPEKASCFFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEET 164

Query: 184 YWTLIVDFKQAKLTRDTVTLNETYMEM--RISLDAIVKGVVDVVLGSDWNDDVKKKLGKM 11
           Y T+ V FK+ K+  D+V L   Y  M    ++ ++V  VV ++  S+W D+V  +L K+
Sbjct: 165 YLTISVGFKREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKL 224

Query: 10  NVQ 2
            +Q
Sbjct: 225 EIQ 227



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/86 (32%), Positives = 48/86 (55%)
 Frame = -3

Query: 364 KHPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKET 185
           K P KA  FF+WV  ++G++     YN + R+L   E+++EFW  + +M R G  +D +T
Sbjct: 242 KTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDT 301

Query: 184 YWTLIVDFKQAKLTRDTVTLNETYME 107
           Y  +    ++ ++  D V L E  M+
Sbjct: 302 YIKITRQLQRNRMMEDAVKLYELMMD 327


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  103 bits (258), Expect = 1e-20
 Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
 Frame = -3

Query: 364 KHPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKET 185
           K P +  +FFNWV  KNGF+PS  +Y+L+LR L   E+MK+FW  + KM   G  IDKET
Sbjct: 106 KDPQRTWNFFNWVTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKET 165

Query: 184 YWTLIVDFKQAKLTRDTVTLNETY--MEMRISLDAIVKGVVDVVLGSDWNDDVKKKLGKM 11
           Y T++  FK+ K+  + V L   Y  M    ++D +VK VV++V  S W+ +V+KKLG++
Sbjct: 166 YLTILGVFKKGKMASEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGEL 225



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/85 (36%), Positives = 49/85 (57%)
 Frame = -3

Query: 361 HPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETY 182
           +P KAL FF WV    G++ S   YN++ R+LG ++++ EFW  V +M   G  +D +TY
Sbjct: 244 YPLKALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTY 303

Query: 181 WTLIVDFKQAKLTRDTVTLNETYME 107
             +   F++ K+  D V L E  M+
Sbjct: 304 IKISRQFQKNKMLEDAVKLYEIMMD 328


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
 Frame = -3

Query: 361 HPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETY 182
           +P KA  FFNWV  K  ++PS  +Y L+LR+L  EET+K FW  +  M   G Y D+E Y
Sbjct: 110 NPEKAWCFFNWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMY 169

Query: 181 WTLIVDFKQAKLTRDTVTLNETYME--MRISLDAIVKGVVDVVLGSDWNDDVKKKLGKMN 8
           + ++  FK+  + +D V+L   Y +     ++  +V  VVD++ GS+W D+V   L K+ 
Sbjct: 170 FPILAGFKRKNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLE 229

Query: 7   VQ 2
           ++
Sbjct: 230 IR 231



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/84 (30%), Positives = 47/84 (55%)
 Frame = -3

Query: 358 PYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYW 179
           P KA +FFNWV  ++G++     YN + R+L   +++++FW  + +M   G  +D +TY 
Sbjct: 248 PLKAYEFFNWVGKQSGYEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVGHELDIDTYI 307

Query: 178 TLIVDFKQAKLTRDTVTLNETYME 107
            +    ++ K+  D V L E  M+
Sbjct: 308 KISKKLQKNKMMEDAVKLYELTMD 331


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
 Frame = -3

Query: 364 KHPYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKET 185
           K P KA +FFNW   KNG   S  +Y+++LRI    E+MK FW  +  M   G Y+D+ET
Sbjct: 99  KQPQKASEFFNWASGKNGSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEET 158

Query: 184 YWTLIVDFKQAKLTRDTVTLNETYMEM--RISLDAIVKGVVDVVLGSDWNDDVKKKLGKM 11
           Y T++   +++K   D   L   Y  M  + ++D++V+ VVD+VLGSDW++DV  KL ++
Sbjct: 159 YKTILGVLRKSKKAADATGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEEL 218

Query: 10  NV 5
            +
Sbjct: 219 GI 220



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 26/84 (30%), Positives = 47/84 (55%)
 Frame = -3

Query: 358 PYKALDFFNWVCVKNGFKPSLPVYNLMLRILGCEETMKEFWDFVYKMSRDGSYIDKETYW 179
           P KAL FF+WV  +  +  +   YN + R+LG +++++ FW  + +M      ID +TY 
Sbjct: 238 PLKALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYI 297

Query: 178 TLIVDFKQAKLTRDTVTLNETYME 107
            +   F+++K+  + V L E  M+
Sbjct: 298 KISRQFQKSKMMGEAVKLYELMMD 321