BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014395
         (1066 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-a...   516   e-144
ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricin...   513   e-143
ref|XP_002280814.1| PREDICTED: putative SWI/SNF-related matrix-a...   509   e-142
ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis ...   505   e-141
ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabid...   505   e-141

>ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A member 3-like 3-like
            [Cucumis sativus] gi|449523563|ref|XP_004168793.1|
            PREDICTED: putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 3-like [Cucumis sativus]
          Length = 1113

 Score =  516 bits (1328), Expect = e-144
 Identities = 256/329 (77%), Positives = 287/329 (87%), Gaps = 2/329 (0%)
 Frame = -2

Query: 1065 SKVQFDQFVAQGKVLHNYAHILELLLRLRQCCNHPFLVMSRADTQKYTDLDKLTRQFLE- 889
            SKVQFDQFVAQGKVLHNYA+ILELLLRLRQCCNHPFLVMSR D+Q+Y +L+KL R+FLE 
Sbjct: 785  SKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQQYANLNKLARKFLES 844

Query: 888  -TSSNTSGQSVPSRAYVEEVVEGIRKGQNTECPICLESADDPVFTPCAHRMCRECIFSSW 712
             T+S T  Q  P+RAYVE+VVE IR+G+NTECPICLE ADD V TPCAHRMCREC+ SSW
Sbjct: 845  NTNSTTMEQVAPTRAYVEDVVECIRRGENTECPICLEFADDAVLTPCAHRMCRECLLSSW 904

Query: 711  RSPSNGVCPICRQHMYKNELITCPSENQFRVDIENNWQESSKVSKLLTCLEQLRLSGSGE 532
            R+P+ G CPICRQ + K ELITCPSE+ FRVD+E NW+ESSKVSKLL CLE++ L GSGE
Sbjct: 905  RTPTCGFCPICRQMLRKTELITCPSESPFRVDVEKNWKESSKVSKLLECLERINLLGSGE 964

Query: 531  KSIIFSQWTSFFDLLEIALKKKGIGFLRFDGKLSQKNREYVLKEFSDSKEKMVLLMSLKA 352
            KSI+FSQWT+FFDLLEI LK+K IGF RFDGKLSQK+RE VLKEFS+SKE  V+L+SLKA
Sbjct: 965  KSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKA 1024

Query: 351  GGVGLNLTAASNVFLMDPWWNPVVEEQAIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQ 172
            GGVGLNLTAASNVF+MDPWWNP VEEQAIMRIHRIGQK      RFIVKDTVEERMQ+VQ
Sbjct: 1025 GGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVRVRRFIVKDTVEERMQQVQ 1084

Query: 171  ARKERMIL*ALTDREVRSVRIEELKMLFR 85
            ARK+RMI  ALTD EVR+ RIEELKMLFR
Sbjct: 1085 ARKQRMIAGALTDEEVRTARIEELKMLFR 1113


>ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricinus communis]
            gi|223531235|gb|EEF33080.1| DNA repair helicase rad5,16,
            putative [Ricinus communis]
          Length = 1051

 Score =  513 bits (1321), Expect = e-143
 Identities = 250/329 (75%), Positives = 290/329 (88%), Gaps = 2/329 (0%)
 Frame = -2

Query: 1065 SKVQFDQFVAQGKVLHNYAHILELLLRLRQCCNHPFLVMSRADTQKYTDLDKLTRQFLET 886
            SKV+FDQFVAQGKVLHNYA ILELLLRLRQCCNHPFLV+SRAD+++YTDL+KL R+FLET
Sbjct: 723  SKVKFDQFVAQGKVLHNYASILELLLRLRQCCNHPFLVLSRADSKQYTDLNKLARRFLET 782

Query: 885  SSNTSG--QSVPSRAYVEEVVEGIRKGQNTECPICLESADDPVFTPCAHRMCRECIFSSW 712
            +++++   Q+VP+ AY+EEVVE IRKG+N ECPIC+E ADDPV TPCAHRMCREC+ SSW
Sbjct: 783  NADSAAREQTVPTPAYIEEVVEDIRKGENNECPICMEYADDPVLTPCAHRMCRECLLSSW 842

Query: 711  RSPSNGVCPICRQHMYKNELITCPSENQFRVDIENNWQESSKVSKLLTCLEQLRLSGSGE 532
            R+P+ G+CPICR  + K +L+TCP+EN+FRV++E NW+ESSKVSKLL CLE++R S  GE
Sbjct: 843  RTPTTGLCPICRTLLKKADLLTCPTENKFRVNVEENWKESSKVSKLLECLERIRRSDCGE 902

Query: 531  KSIIFSQWTSFFDLLEIALKKKGIGFLRFDGKLSQKNREYVLKEFSDSKEKMVLLMSLKA 352
            KSIIFSQWTSF DLLEI L+++ IGFLRFDGKL QK RE  LKEF+++KEKMVLLMSLKA
Sbjct: 903  KSIIFSQWTSFLDLLEIPLRRRAIGFLRFDGKLVQKQRERTLKEFNETKEKMVLLMSLKA 962

Query: 351  GGVGLNLTAASNVFLMDPWWNPVVEEQAIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQ 172
            GGVGLNLTAASNVFLMDPWWNP VEEQAIMRIHRIGQK      RFIVKDT+EERMQ+VQ
Sbjct: 963  GGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKDTLEERMQQVQ 1022

Query: 171  ARKERMIL*ALTDREVRSVRIEELKMLFR 85
            ARK+RMI  ALTD EVRS RIEELKMLFR
Sbjct: 1023 ARKQRMIAGALTDEEVRSARIEELKMLFR 1051


>ref|XP_002280814.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A member 3-like 3-like
            [Vitis vinifera]
          Length = 1224

 Score =  509 bits (1311), Expect = e-142
 Identities = 247/329 (75%), Positives = 287/329 (87%), Gaps = 2/329 (0%)
 Frame = -2

Query: 1065 SKVQFDQFVAQGKVLHNYAHILELLLRLRQCCNHPFLVMSRADTQKYTDLDKLTRQFLET 886
            SKV+FDQFV QG+VLHNYA ILELLLRLRQCCNHPFLVMSR DTQ+Y DL KL R+FLE 
Sbjct: 896  SKVRFDQFVEQGRVLHNYASILELLLRLRQCCNHPFLVMSRGDTQQYADLSKLARKFLEN 955

Query: 885  S--SNTSGQSVPSRAYVEEVVEGIRKGQNTECPICLESADDPVFTPCAHRMCRECIFSSW 712
            +  S+TS  S+P+RA+VEEVV GIR+G+NTECPICLESADDPV TPCAH MCREC+ SSW
Sbjct: 956  NPCSDTSNHSIPTRAFVEEVVGGIRRGENTECPICLESADDPVLTPCAHLMCRECLLSSW 1015

Query: 711  RSPSNGVCPICRQHMYKNELITCPSENQFRVDIENNWQESSKVSKLLTCLEQLRLSGSGE 532
            R+P +G+CPICR+ + K +LITCPSEN+FR+D+E NW+ESSK+S+LL CLE++  S  GE
Sbjct: 1016 RTPLSGLCPICRKLLKKTDLITCPSENRFRIDVEKNWKESSKISELLHCLERISQSRIGE 1075

Query: 531  KSIIFSQWTSFFDLLEIALKKKGIGFLRFDGKLSQKNREYVLKEFSDSKEKMVLLMSLKA 352
            KSI+FSQWTSF DLLEI L+++GIGFLR+DGK+ QK RE +LKEFS+++EK VLLMSLKA
Sbjct: 1076 KSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILKEFSETEEKTVLLMSLKA 1135

Query: 351  GGVGLNLTAASNVFLMDPWWNPVVEEQAIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQ 172
            GGVGLNLTAASNVFLMDPWWNP VEEQAIMRIHRIGQ+      RFIVKDTVEERMQ+VQ
Sbjct: 1136 GGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQERTVRVRRFIVKDTVEERMQQVQ 1195

Query: 171  ARKERMIL*ALTDREVRSVRIEELKMLFR 85
            ARK+RMI  ALTD EVR+ RIEELKMLFR
Sbjct: 1196 ARKQRMITGALTDEEVRTARIEELKMLFR 1224


>ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
            gi|297311253|gb|EFH41677.1| SNF2 domain-containing
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1305

 Score =  505 bits (1301), Expect = e-141
 Identities = 242/327 (74%), Positives = 285/327 (87%)
 Frame = -2

Query: 1065 SKVQFDQFVAQGKVLHNYAHILELLLRLRQCCNHPFLVMSRADTQKYTDLDKLTRQFLET 886
            SKVQFDQFVAQGKVLHNYA+ILELLLRLRQCCNHPFLVMSRAD+Q+Y DLD L R+FL+ 
Sbjct: 979  SKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDN 1038

Query: 885  SSNTSGQSVPSRAYVEEVVEGIRKGQNTECPICLESADDPVFTPCAHRMCRECIFSSWRS 706
            + ++  Q+ PSRAY+EEV++ +R G + ECPICLESADDP+ TPCAHRMCREC+ +SWRS
Sbjct: 1039 NPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPILTPCAHRMCRECLLTSWRS 1098

Query: 705  PSNGVCPICRQHMYKNELITCPSENQFRVDIENNWQESSKVSKLLTCLEQLRLSGSGEKS 526
            PS G+CPICR  + + ELI+CP+++ FRVD+  NW+ESSKVS+LL CLE+++ SGSGEKS
Sbjct: 1099 PSCGLCPICRTILKRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIQKSGSGEKS 1158

Query: 525  IIFSQWTSFFDLLEIALKKKGIGFLRFDGKLSQKNREYVLKEFSDSKEKMVLLMSLKAGG 346
            I+FSQWTSF DLLEI L++KG  FLRFDGKL+QK RE VLKEF+++K+K +LLMSLKAGG
Sbjct: 1159 IVFSQWTSFLDLLEIPLRRKGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGG 1218

Query: 345  VGLNLTAASNVFLMDPWWNPVVEEQAIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQAR 166
            VGLNLTAAS+VFLMDPWWNP VEEQAIMRIHRIGQK      RFIVKDTVEERMQ+VQAR
Sbjct: 1219 VGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQAR 1278

Query: 165  KERMIL*ALTDREVRSVRIEELKMLFR 85
            K+RMI  ALTD EVRS R+EELKMLFR
Sbjct: 1279 KQRMIAGALTDEEVRSARLEELKMLFR 1305


>ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
            gi|60390960|sp|Q9FIY7.1|SM3L3_ARATH RecName:
            Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 3; Short=SMARCA3-like protein 3
            gi|10178192|dbj|BAB11616.1| DNA repair protein-like
            [Arabidopsis thaliana] gi|332007595|gb|AED94978.1|
            Helicase protein with RING/U-box domain [Arabidopsis
            thaliana]
          Length = 1277

 Score =  505 bits (1300), Expect = e-141
 Identities = 242/327 (74%), Positives = 285/327 (87%)
 Frame = -2

Query: 1065 SKVQFDQFVAQGKVLHNYAHILELLLRLRQCCNHPFLVMSRADTQKYTDLDKLTRQFLET 886
            SKVQFDQFVAQGKVLHNYA+ILELLLRLRQCCNHPFLVMSRAD+Q+Y DLD L R+FL+ 
Sbjct: 951  SKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDN 1010

Query: 885  SSNTSGQSVPSRAYVEEVVEGIRKGQNTECPICLESADDPVFTPCAHRMCRECIFSSWRS 706
            + ++  Q+ PSRAY+EEV++ +R G + ECPICLESADDPV TPCAHRMCREC+ +SWRS
Sbjct: 1011 NPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRS 1070

Query: 705  PSNGVCPICRQHMYKNELITCPSENQFRVDIENNWQESSKVSKLLTCLEQLRLSGSGEKS 526
            PS G+CPICR  + + ELI+CP+++ FRVD+  NW+ESSKVS+LL CLE+++ SGSGEKS
Sbjct: 1071 PSCGLCPICRTILKRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKS 1130

Query: 525  IIFSQWTSFFDLLEIALKKKGIGFLRFDGKLSQKNREYVLKEFSDSKEKMVLLMSLKAGG 346
            I+FSQWTSF DLLEI L+++G  FLRFDGKL+QK RE VLKEF+++K+K +LLMSLKAGG
Sbjct: 1131 IVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGG 1190

Query: 345  VGLNLTAASNVFLMDPWWNPVVEEQAIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQAR 166
            VGLNLTAAS+VFLMDPWWNP VEEQAIMRIHRIGQK      RFIVKDTVEERMQ+VQAR
Sbjct: 1191 VGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQAR 1250

Query: 165  KERMIL*ALTDREVRSVRIEELKMLFR 85
            K+RMI  ALTD EVRS R+EELKMLFR
Sbjct: 1251 KQRMIAGALTDEEVRSARLEELKMLFR 1277