BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014390
         (540 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   149   3e-34
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   145   5e-33
ref|XP_002523877.1| pentatricopeptide repeat-containing protein,...   144   8e-33
gb|AFK35002.1| unknown [Lotus japonicus]                              137   1e-30
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   137   1e-30

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score =  149 bits (375), Expect = 3e-34
 Identities = 71/142 (50%), Positives = 103/142 (72%)
 Frame = +2

Query: 113 YIPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIF 292
           +IP + +L++SC S ++L+ L+++HARIIT+GI  HDF+RAKL++SYA+C QM +A+YIF
Sbjct: 6   HIPSFATLLDSCASKRDLQKLKQIHARIITVGISRHDFIRAKLVASYASCAQMSQASYIF 65

Query: 293 SVTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXX 472
           S+TNR  TFLYN++IRGY++L  F  S++++ QM F  K  D +TLP+VLKSC+GLSA  
Sbjct: 66  SLTNRRPTFLYNSLIRGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCSGLSALR 125

Query: 473 XXXXXXXXXXXNGFSYGVATCN 538
                      NG +  +AT N
Sbjct: 126 LGRQVHCAVVANGLASDLATIN 147


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  145 bits (365), Expect = 5e-33
 Identities = 70/141 (49%), Positives = 96/141 (68%)
 Frame = +2

Query: 116 IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 295
           +P Y +L+++C+S+K+LKNL+++HA  ITLGI  +DF+R+KL+SSYA C Q+HEA  +FS
Sbjct: 8   VPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEANILFS 67

Query: 296 VTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXX 475
            T R  TFL+N++IR Y++LN F  S+ ++ QM    K  DRHTLP VLKSCAGLSA   
Sbjct: 68  FTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCAGLSALRL 127

Query: 476 XXXXXXXXXXNGFSYGVATCN 538
                     NGF   +A  N
Sbjct: 128 GQQVHGAVLVNGFGLDLANSN 148


>ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536965|gb|EEF38603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 302

 Score =  144 bits (363), Expect = 8e-33
 Identities = 71/141 (50%), Positives = 98/141 (69%)
 Frame = +2

Query: 116 IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 295
           IPLY SLI++C +TKN   L ++HA+ IT GI++ DF+R+KL+S+YA+C QM +AA +FS
Sbjct: 4   IPLYASLIDACITTKNFTTLIQIHAQTITNGIYHRDFIRSKLVSAYASCTQMRQAALLFS 63

Query: 296 VTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXX 475
            TNR +TFL+N++IR YA+LN F  S++ + +M    K  DRHTLPSVLKSCAGLSA   
Sbjct: 64  FTNRQTTFLFNSLIRAYASLNLFSHSLSFFRRMLDACKPIDRHTLPSVLKSCAGLSAVRL 123

Query: 476 XXXXXXXXXXNGFSYGVATCN 538
                     NG ++ +A  N
Sbjct: 124 GQQVHGILLINGLAFDLANSN 144


>gb|AFK35002.1| unknown [Lotus japonicus]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30
 Identities = 66/141 (46%), Positives = 93/141 (65%)
 Frame = +2

Query: 116 IPLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFS 295
           +P Y +L+E+C+ +KNLKNLR++HA  I LGI  +DF++ KL+S YA+C Q+H+A  +FS
Sbjct: 32  VPFYATLLEACSYSKNLKNLRQIHAHTIRLGISRNDFIKTKLVSCYASCAQLHQANILFS 91

Query: 296 VTNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXX 475
            TNR  TFL+N++IR  A+LN F  S++++ QM    K  DR TLP VLKSCAGL+A   
Sbjct: 92  FTNRQPTFLFNSLIRANASLNLFSQSLSLFRQMLRSWKPFDRQTLPVVLKSCAGLTALRL 151

Query: 476 XXXXXXXXXXNGFSYGVATCN 538
                     NG+   +A  N
Sbjct: 152 GQQVHGAVLVNGYGLDLANSN 172


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  137 bits (344), Expect = 1e-30
 Identities = 65/140 (46%), Positives = 93/140 (66%)
 Frame = +2

Query: 119 PLYTSLIESCTSTKNLKNLRKLHARIITLGIFNHDFVRAKLISSYATCLQMHEAAYIFSV 298
           PLY +L+  C S+KN+ +L+ +HAR I LGI + DF+R KL+S YA+C ++H+A  +FS 
Sbjct: 9   PLYATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSF 68

Query: 299 TNRHSTFLYNTVIRGYAALNHFRDSMNVYSQMRFHGKRHDRHTLPSVLKSCAGLSAXXXX 478
           TNR  TFLYN++IR Y +LN F+++++++ +MR   K  D HTLP VLKSCAGLSA    
Sbjct: 69  TNRKPTFLYNSLIRAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLG 128

Query: 479 XXXXXXXXXNGFSYGVATCN 538
                    NGF+  +   N
Sbjct: 129 KQVHGAVLVNGFALDLKNSN 148