BLASTX nr result

ID: Coptis25_contig00014374 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014374
         (987 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513762.1| conserved hypothetical protein [Ricinus comm...   159   1e-36
ref|XP_002300988.1| predicted protein [Populus trichocarpa] gi|2...   157   4e-36
gb|ABK94339.1| unknown [Populus trichocarpa]                          155   2e-35
ref|XP_003544689.1| PREDICTED: uncharacterized protein At4g08330...   154   2e-35
gb|ACU24223.1| unknown [Glycine max]                                  154   2e-35

>ref|XP_002513762.1| conserved hypothetical protein [Ricinus communis]
           gi|223546848|gb|EEF48345.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 191

 Score =  159 bits (402), Expect = 1e-36
 Identities = 83/132 (62%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = +3

Query: 216 CGSCGYAXXXXXXXXXXXXXXXKYGKSMKRGIISFFSIDENRFTQVDELQCIPYYVSKNS 395
           CG+CGY                KYGKS+KRGIISFF IDE+RFTQ +E QCIPY+ SK+S
Sbjct: 62  CGTCGYELNLSSSNRNTSTIGSKYGKSIKRGIISFFDIDESRFTQAEEFQCIPYF-SKSS 120

Query: 396 WGFFRRRTKLLCRKCGNLVGTTYEDNTSLDCVGSDVSDSTVGNTRSTRRKYDVKIRALQP 575
           WGFFRRRTKLLCRKCGN +G  YED TS   + SD SDS+  N  S RRKYD+KIRALQP
Sbjct: 121 WGFFRRRTKLLCRKCGNYIGIAYEDETSAYPLVSDGSDSSSVN-ESKRRKYDIKIRALQP 179

Query: 576 SS-DESGLPLFM 608
           SS D  G PL+M
Sbjct: 180 SSVDRCGTPLYM 191


>ref|XP_002300988.1| predicted protein [Populus trichocarpa] gi|222842714|gb|EEE80261.1|
           predicted protein [Populus trichocarpa]
          Length = 159

 Score =  157 bits (397), Expect = 4e-36
 Identities = 84/154 (54%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
 Frame = +3

Query: 144 SFRNGTHHDNPLSYSQSIRDVNYSCGSCGYAXXXXXXXXXXXXXXXKYGKSMKRGIISFF 323
           ++ NG  H +  S S S R V+YSCG CGY                KYGKS+KRGIISFF
Sbjct: 5   AYLNGNPHHSFSSSSASQRHVSYSCGICGYELNLSSSNRNTSSIGSKYGKSIKRGIISFF 64

Query: 324 SIDENRFTQVDELQCIPYYVSKNSWGFFRRRTKLLCRKCGNLVGTTYEDNTSLDCVGSDV 503
            IDE+RFTQVDE QCIP++ S+NSWG F RRT LLCRKCGN +G  Y+D  S   + +D 
Sbjct: 65  FIDESRFTQVDEFQCIPFF-SRNSWGLFHRRTALLCRKCGNNIGIAYDDKASAYPLVADG 123

Query: 504 SDSTVGNTRSTRRKYDVKIRALQPSS-DESGLPL 602
           SDS+  +  S  RKYDVKIRALQPSS D+   P+
Sbjct: 124 SDSSSVSEVSKHRKYDVKIRALQPSSVDQFSTPI 157


>gb|ABK94339.1| unknown [Populus trichocarpa]
          Length = 164

 Score =  155 bits (391), Expect = 2e-35
 Identities = 84/157 (53%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
 Frame = +3

Query: 138 QDSFRNGTHHDNPLSYSQSIRDVNYSCGSCGYAXXXXXXXXXXXXXXXKYGKSMKRGIIS 317
           ++++ NG HH +  S S S R V+YSCG CGY                KYGKS+KRG IS
Sbjct: 8   REAYLNGNHHHSFSSSSASHRHVSYSCGICGYELNLSSSNRNTSTIGSKYGKSIKRGKIS 67

Query: 318 FFSIDENRFTQVDELQCIPYYVSKNSWGFFRRRTKLLCRKCGNLVGTTYEDNTSLDCVGS 497
           FF IDE+RFTQVDE QC P++ SKNS G FR+RT LLCRKCGN +G  Y D  S   + +
Sbjct: 68  FFFIDESRFTQVDEFQCFPFF-SKNSLGLFRQRTALLCRKCGNHIGIAYADEASAYPLVA 126

Query: 498 DVSDSTVGNTRSTRRKYDVKIRALQPSSDES-GLPLF 605
           D SDS+  +    RRKYDVKIRALQPSS E   +PL+
Sbjct: 127 DGSDSSSVSEVFKRRKYDVKIRALQPSSAEQFSIPLY 163


>ref|XP_003544689.1| PREDICTED: uncharacterized protein At4g08330, chloroplastic-like
           [Glycine max]
          Length = 158

 Score =  154 bits (390), Expect = 2e-35
 Identities = 82/155 (52%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
 Frame = +3

Query: 144 SFRNGTHHDNPLSYSQSIRDVNYSCGSCGYAXXXXXXXXXXXXXXXKYGKSMKRGIISFF 323
           +F+ G H +   S S S RDV YSCG+CGY                KYGKS+KRGIISFF
Sbjct: 5   AFKRGGHFNRTYSCS-SQRDVCYSCGTCGYELNLSSSNRNTASIGSKYGKSIKRGIISFF 63

Query: 324 SIDENRFTQVDELQCIPYYVSKNSWGFFRRRTKLLCRKCGNLVGTTYEDNTSLDCVGSDV 503
           SID +RFTQVDE+QC+P++  K+SWG FRRRTKLLCRKCGN +G  Y   TS   + SD 
Sbjct: 64  SIDLSRFTQVDEIQCVPHF-DKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTSSFPLVSDG 122

Query: 504 SDSTVGNTRSTRRKYDVKIRALQP-SSDESGLPLF 605
           ++S+  +   +  KYD++I ALQP SS+ESG+P+F
Sbjct: 123 AESSPSSKVVSHTKYDIRICALQPSSSEESGIPVF 157


>gb|ACU24223.1| unknown [Glycine max]
          Length = 158

 Score =  154 bits (390), Expect = 2e-35
 Identities = 82/155 (52%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
 Frame = +3

Query: 144 SFRNGTHHDNPLSYSQSIRDVNYSCGSCGYAXXXXXXXXXXXXXXXKYGKSMKRGIISFF 323
           +F+ G H +   S S S RDV YSCG+CGY                KYGKS+KRGIISFF
Sbjct: 5   AFKRGGHFNRTYSCS-SQRDVCYSCGTCGYELNLFSSNRNTASIGSKYGKSIKRGIISFF 63

Query: 324 SIDENRFTQVDELQCIPYYVSKNSWGFFRRRTKLLCRKCGNLVGTTYEDNTSLDCVGSDV 503
           SID +RFTQVDE+QC+P++  K+SWG FRRRTKLLCRKCGN +G  Y   TS   + SD 
Sbjct: 64  SIDLSRFTQVDEIQCVPHF-DKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTSSFPLVSDG 122

Query: 504 SDSTVGNTRSTRRKYDVKIRALQP-SSDESGLPLF 605
           ++S+  +   +  KYD++I ALQP SS+ESG+P+F
Sbjct: 123 AESSPSSKVVSHTKYDIRICALQPSSSEESGIPVF 157


Top