BLASTX nr result
ID: Coptis25_contig00014313
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00014313
(2010 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279705.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 683 0.0
emb|CBI32700.3| unnamed protein product [Vitis vinifera] 680 0.0
emb|CAN61726.1| hypothetical protein VITISV_032421 [Vitis vinifera] 671 0.0
ref|XP_004137811.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 661 0.0
ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group] g... 654 0.0
>ref|XP_002279705.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 57 [Vitis vinifera]
Length = 524
Score = 683 bits (1763), Expect = 0.0
Identities = 358/511 (70%), Positives = 409/511 (80%), Gaps = 1/511 (0%)
Frame = +2
Query: 104 VDRDVSFLFSGIHFDKKNIPDVFSISKGKREEGDEVEALEIEKVESEERMVSGRKRKRKT 283
+++ SFLFSGI FDKK FS K K+E D VE+ K E+EE +KRKRK
Sbjct: 1 MEKGTSFLFSGITFDKKKFAADFSRFKEKKESDDLVES---GKSEAEEGARPVKKRKRKA 57
Query: 284 KDSERVEGFNVFXXXXXXXXXXXXXXXXXLGVRQ-KKEYHRQIERDALLRKKHGIHISGH 460
++ VEGFNVF + Q KKE +RQIERDALLRKKH IHISG+
Sbjct: 58 TVADPVEGFNVFKTSKSSAQGIQQNDQEKSELSQAKKELNRQIERDALLRKKHKIHISGN 117
Query: 461 NVPSPLQNFDDLSSRYGCTSYLFAKLAELGFKEPTPIQRQAIPVILSGRECFACAPTGSG 640
NVPSPL+NF +LSSRYGC SYL LAELGFKEPTPIQRQAIPV+LSGRECFACAPTGSG
Sbjct: 118 NVPSPLENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSG 177
Query: 641 KTLAFLFPILMKLQPGSKEGIRAVILCPTRELAAQTTRECXXXXXXXXXXXXXMTRDLAK 820
KTLAF+ P+LMKL+ SK+GIRAVILCPTRELAAQT RE +T++L +
Sbjct: 178 KTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTKELLR 237
Query: 821 NGSFQTMHCDIIVSTPFRLEFAIRKRKLDLSRVEYLVLDESDKLFELGYVKQIDCVVKAC 1000
+G + CDI++STP RL AIRK+KLDLSRVEYLVLDESDKLFELG VKQID VVKAC
Sbjct: 238 SGDISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVKAC 297
Query: 1001 SNPSIIRSLFSATLPDSVEELARTIMHDAVRVIVGRKNSASELIEQKLVFAGSEYGKLIA 1180
SNPSIIRSLFSATLPD VEELARTIMHDAVRVI+GRKNSASELI+QKLVFAGSE GKL+A
Sbjct: 298 SNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKLLA 357
Query: 1181 IRQTFSESWNPPVLVFVQSIERAKQLYQELAFENIRVDIIHSDLSQIQRDNAVENFRAGK 1360
+RQ+F+ES NPP+L+FVQS ERAK+LY ELAF++IRVD+IH+DLSQ QR+NAV++FRAGK
Sbjct: 358 LRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGK 417
Query: 1361 KWVLIATDVISRGMDFKGVNCVINYDLPESAAAYIHRIGRCGRAGRVGQAITFYTDTDVK 1540
WVLIATDVI+RGMDFKG+NCVINYD P+S AAYIHRIGR GRAGR G+AIT YT+ DV
Sbjct: 418 TWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDDVP 477
Query: 1541 FLRNIANVIAASGGEVPSWIMALPKLRRTKH 1633
FLRNIANV+AASG EVPSWIMALPKL+ KH
Sbjct: 478 FLRNIANVMAASGCEVPSWIMALPKLKWKKH 508
>emb|CBI32700.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 680 bits (1754), Expect = 0.0
Identities = 356/511 (69%), Positives = 411/511 (80%), Gaps = 1/511 (0%)
Frame = +2
Query: 104 VDRDVSFLFSGIHFDKKNIPDVFSISKGKREEGDEVEALEIEKVESEERMVSGRKRKRKT 283
+++ SFLFSGI FDKK FS + K++E D++ +E K E+EE +KRKRK
Sbjct: 1 MEKGTSFLFSGITFDKKKFAADFS--RFKKKESDDL--VESGKSEAEEGARPVKKRKRKA 56
Query: 284 KDSERVEGFNVFXXXXXXXXXXXXXXXXXLGVRQ-KKEYHRQIERDALLRKKHGIHISGH 460
++ VEGFNVF + Q KKE +RQIERDALLRKKH IHISG+
Sbjct: 57 TVADPVEGFNVFKTSKSSAQGIQQNDQEKSELSQAKKELNRQIERDALLRKKHKIHISGN 116
Query: 461 NVPSPLQNFDDLSSRYGCTSYLFAKLAELGFKEPTPIQRQAIPVILSGRECFACAPTGSG 640
NVPSPL+NF +LSSRYGC SYL LAELGFKEPTPIQRQAIPV+LSGRECFACAPTGSG
Sbjct: 117 NVPSPLENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSG 176
Query: 641 KTLAFLFPILMKLQPGSKEGIRAVILCPTRELAAQTTRECXXXXXXXXXXXXXMTRDLAK 820
KTLAF+ P+LMKL+ SK+GIRAVILCPTRELAAQT RE +T++L +
Sbjct: 177 KTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTKELLR 236
Query: 821 NGSFQTMHCDIIVSTPFRLEFAIRKRKLDLSRVEYLVLDESDKLFELGYVKQIDCVVKAC 1000
+G + CDI++STP RL AIRK+KLDLSRVEYLVLDESDKLFELG VKQID VVKAC
Sbjct: 237 SGDISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVKAC 296
Query: 1001 SNPSIIRSLFSATLPDSVEELARTIMHDAVRVIVGRKNSASELIEQKLVFAGSEYGKLIA 1180
SNPSIIRSLFSATLPD VEELARTIMHDAVRVI+GRKNSASELI+QKLVFAGSE GKL+A
Sbjct: 297 SNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKLLA 356
Query: 1181 IRQTFSESWNPPVLVFVQSIERAKQLYQELAFENIRVDIIHSDLSQIQRDNAVENFRAGK 1360
+RQ+F+ES NPP+L+FVQS ERAK+LY ELAF++IRVD+IH+DLSQ QR+NAV++FRAGK
Sbjct: 357 LRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGK 416
Query: 1361 KWVLIATDVISRGMDFKGVNCVINYDLPESAAAYIHRIGRCGRAGRVGQAITFYTDTDVK 1540
WVLIATDVI+RGMDFKG+NCVINYD P+S AAYIHRIGR GRAGR G+AIT YT+ DV
Sbjct: 417 TWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDDVP 476
Query: 1541 FLRNIANVIAASGGEVPSWIMALPKLRRTKH 1633
FLRNIANV+AASG EVPSWIMALPKL+ KH
Sbjct: 477 FLRNIANVMAASGCEVPSWIMALPKLKWKKH 507
>emb|CAN61726.1| hypothetical protein VITISV_032421 [Vitis vinifera]
Length = 554
Score = 671 bits (1732), Expect = 0.0
Identities = 354/511 (69%), Positives = 405/511 (79%), Gaps = 1/511 (0%)
Frame = +2
Query: 104 VDRDVSFLFSGIHFDKKNIPDVFSISKGKREEGDEVEALEIEKVESEERMVSGRKRKRKT 283
+++ SFLFSGI FDKK FS K K+E D VE+ K E+EE +KRKRK
Sbjct: 1 MEKGTSFLFSGITFDKKKFAADFSRFKEKKESDDLVES---GKSEAEEGARPVKKRKRKA 57
Query: 284 KDSERVEGFNVFXXXXXXXXXXXXXXXXXLGVRQ-KKEYHRQIERDALLRKKHGIHISGH 460
++ VEGFNVF + Q KKE +RQIERDALLRKKH IHISG+
Sbjct: 58 TVADPVEGFNVFKTSKSSAQGIQQNDQEKSELSQAKKELNRQIERDALLRKKHXIHISGN 117
Query: 461 NVPSPLQNFDDLSSRYGCTSYLFAKLAELGFKEPTPIQRQAIPVILSGRECFACAPTGSG 640
NVPSPL+NF +LSSRYGC SYL LAELGFKEPTPIQRQAIP GRECFACAPTGSG
Sbjct: 118 NVPSPLENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIP----GRECFACAPTGSG 173
Query: 641 KTLAFLFPILMKLQPGSKEGIRAVILCPTRELAAQTTRECXXXXXXXXXXXXXMTRDLAK 820
KTLAF+ P+LMKL+ SK+GIRAVILCPTRELAAQT RE +T++L +
Sbjct: 174 KTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTKELLR 233
Query: 821 NGSFQTMHCDIIVSTPFRLEFAIRKRKLDLSRVEYLVLDESDKLFELGYVKQIDCVVKAC 1000
+G + CDI++STP RL AIRK+KLDLSRVEYLVLDESDKLFELG VKQID VVKAC
Sbjct: 234 SGDISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVKAC 293
Query: 1001 SNPSIIRSLFSATLPDSVEELARTIMHDAVRVIVGRKNSASELIEQKLVFAGSEYGKLIA 1180
SNPSIIRSLFSATLPD VEELARTIMHDAVRVI+GRKNSASELI+QKLVFAG+E GKL+A
Sbjct: 294 SNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGNEEGKLLA 353
Query: 1181 IRQTFSESWNPPVLVFVQSIERAKQLYQELAFENIRVDIIHSDLSQIQRDNAVENFRAGK 1360
+RQ+F+ES NPP+L+FVQS ERAK+LY ELAF++IRVD+IH+DLSQ QR+NAV++FRAGK
Sbjct: 354 LRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGK 413
Query: 1361 KWVLIATDVISRGMDFKGVNCVINYDLPESAAAYIHRIGRCGRAGRVGQAITFYTDTDVK 1540
WVLIATDVI+RGMDFKG+NCVINYD P+S AAYIHRIGR GRAGR G+AIT YT+ DV
Sbjct: 414 TWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDDVP 473
Query: 1541 FLRNIANVIAASGGEVPSWIMALPKLRRTKH 1633
FLRNIANV+AASG EVPSWIMALPKL+ KH
Sbjct: 474 FLRNIANVMAASGCEVPSWIMALPKLKWKKH 504
>ref|XP_004137811.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 57-like [Cucumis
sativus]
Length = 616
Score = 661 bits (1705), Expect = 0.0
Identities = 341/555 (61%), Positives = 415/555 (74%), Gaps = 8/555 (1%)
Frame = +2
Query: 104 VDRDVSFLFSGIHFDKKNIPDVFSISKGKREEGDEVE---ALEIEKVESEERMVSG--RK 268
+++ SFLF+GIHFDKK F+ +GK+E + VE +++ +E E RK
Sbjct: 1 MEKGTSFLFAGIHFDKKRFAADFAKFEGKKESDNVVEGPSSIDNGDLEVHEGSTPSDKRK 60
Query: 269 RKRKTKDSERVEGFNVFXXXXXXXXXXXXXXXXXLG---VRQKKEYHRQIERDALLRKKH 439
RKRK+ ++ VEGF+VF +KKE++R++ERDAL RKK+
Sbjct: 61 RKRKSATAKSVEGFSVFKDSKSTADTSLNEENHLSENDPSEEKKEFYRKLERDALFRKKY 120
Query: 440 GIHISGHNVPSPLQNFDDLSSRYGCTSYLFAKLAELGFKEPTPIQRQAIPVILSGRECFA 619
IH+SG+NVPSPLQNF +LS+RY C SYL L ELGFKEPTPIQRQAIPV+LSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFGELSTRYDCDSYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
Query: 620 CAPTGSGKTLAFLFPILMKLQPGSKEGIRAVILCPTRELAAQTTRECXXXXXXXXXXXXX 799
CAPTGSGKTLAF+ P+LM+L+ SKEGIRAVILCPTRELA+QT REC
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTIRECKKLAKGKKFHIKL 240
Query: 800 MTRDLAKNGSFQTMHCDIIVSTPFRLEFAIRKRKLDLSRVEYLVLDESDKLFELGYVKQI 979
+T+++ ++ F CD+++STP RL AIRK+K+DLSRVEYLVLDESDKLFELG +KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300
Query: 980 DCVVKACSNPSIIRSLFSATLPDSVEELARTIMHDAVRVIVGRKNSASELIEQKLVFAGS 1159
D VVKACSNPSI+RSLFSATLPD VE+LAR++MHDAVRVIVGRKN+ASE ++QKLVFAGS
Sbjct: 301 DAVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
Query: 1160 EYGKLIAIRQTFSESWNPPVLVFVQSIERAKQLYQELAFENIRVDIIHSDLSQIQRDNAV 1339
E GKL+A+RQ+FSES NPPVL+FVQS ERAK+LY ELAFENIRV +IHSDLSQ++R+N V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVSVIHSDLSQLERENVV 420
Query: 1340 ENFRAGKKWVLIATDVISRGMDFKGVNCVINYDLPESAAAYIHRIGRCGRAGRVGQAITF 1519
++FRAGK WVLIATDVISRGMDFKGVNCVINYD P+SAAAYIHRIGR GRAGR G+AITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
Query: 1520 YTDTDVKFLRNIANVIAASGGEVPSWIMALPKLRRTKHXXXXXXXXXXXXXXXXXNQPTM 1699
YTD D+ FLRNIANV++ASG EVPSWI L K++ KH P
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELRKMKWKKHRPKRDSISTKPHEDGDTEPPKK 540
Query: 1700 KNTRQNTRRMTMKNK 1744
K+ + +R ++ K
Sbjct: 541 KSKKHRPKRNSVATK 555
>ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
gi|143456709|sp|Q5K5B6.2|RH57_ORYSJ RecName:
Full=DEAD-box ATP-dependent RNA helicase 57
gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA
helicase [Oryza sativa Japonica Group]
gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA
helicase [Oryza sativa Japonica Group]
gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa
Japonica Group] gi|125601315|gb|EAZ40891.1| hypothetical
protein OsJ_25369 [Oryza sativa Japonica Group]
Length = 540
Score = 654 bits (1687), Expect = 0.0
Identities = 335/519 (64%), Positives = 405/519 (78%), Gaps = 14/519 (2%)
Frame = +2
Query: 119 SFLFSGIHFDKKNIPDVFSISKGKREEGDEVEAL-----EIEKVESEERMVSGRKRKRKT 283
S LF+G HFD+K F+ + D A + K +S+ + +KR+ +
Sbjct: 8 SALFAGTHFDRKRFAGDFARFRQGPPAPDVASAAAPSPEKKRKRQSKAKAKKSKKRRAEG 67
Query: 284 KDS--ERVEGFNVFXXXXXXXXXXXXXXXXXLG-------VRQKKEYHRQIERDALLRKK 436
DS + VEGF+VF G VR++KE R+IER A+LRKK
Sbjct: 68 ADSASDAVEGFSVFKGLAAKKDEDDSEKKVETGKSEDSEVVRRRKEVEREIERAAILRKK 127
Query: 437 HGIHISGHNVPSPLQNFDDLSSRYGCTSYLFAKLAELGFKEPTPIQRQAIPVILSGRECF 616
IHISG NVP+PL+NF++L SRYGC SYL L++LGF+EPTPIQRQAIP++LSGRECF
Sbjct: 128 FDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECF 187
Query: 617 ACAPTGSGKTLAFLFPILMKLQPGSKEGIRAVILCPTRELAAQTTRECXXXXXXXXXXXX 796
ACAPTGSGKTLAFLFPILMK++PGSKEG++AVILCPTRELAAQTTREC
Sbjct: 188 ACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKLAKGRKFYIK 247
Query: 797 XMTRDLAKNGSFQTMHCDIIVSTPFRLEFAIRKRKLDLSRVEYLVLDESDKLFELGYVKQ 976
MT+DL+K+G+F+ MHCDI++STP RL+ A++KR LDLSRVEYLVLDESDKLFELG+V+
Sbjct: 248 LMTKDLSKSGNFKDMHCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEV 307
Query: 977 IDCVVKACSNPSIIRSLFSATLPDSVEELARTIMHDAVRVIVGRKNSASELIEQKLVFAG 1156
ID VVKACSNPSIIRSLFSATLPDS+E LARTIMHDAVRVIVGRKNSAS LI+QKL+FAG
Sbjct: 308 IDSVVKACSNPSIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSLIKQKLIFAG 367
Query: 1157 SEYGKLIAIRQTFSESWNPPVLVFVQSIERAKQLYQELAFENIRVDIIHSDLSQIQRDNA 1336
+E GKL+A+RQ+F+ES NPPVL+FVQS ERAK+LY+ELAF+++R D+IH+DL + QR +A
Sbjct: 368 TEKGKLLALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDA 427
Query: 1337 VENFRAGKKWVLIATDVISRGMDFKGVNCVINYDLPESAAAYIHRIGRCGRAGRVGQAIT 1516
V+N RAGK WVLIAT+VI+RGMDFKGVNCVINYD PESA+AYIHRIGR GRAGR G+AIT
Sbjct: 428 VDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAIT 487
Query: 1517 FYTDTDVKFLRNIANVIAASGGEVPSWIMALPKLRRTKH 1633
F+T+ D FLRNIANV+ +SG EVPSWI ALPKL+R KH
Sbjct: 488 FFTEEDKPFLRNIANVLISSGCEVPSWIKALPKLKRKKH 526