BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014275
         (948 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-...   504   e-140
ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glyc...   481   e-133
ref|XP_002262998.2| PREDICTED: mutS protein homolog 4-like, part...   480   e-133
ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis t...   475   e-132
ref|XP_002870107.1| hypothetical protein ARALYDRAFT_493139 [Arab...   475   e-132

>ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-like, partial [Cucumis
            sativus]
          Length = 770

 Score =  504 bits (1298), Expect = e-140
 Identities = 250/316 (79%), Positives = 280/316 (88%)
 Frame = -1

Query: 948  LCLAAVAATIKWIEAEKGVIVTNHSLLVTFNGSFDHMNIDATSVQNLEIIEPLHSNLWGS 769
            LCLAA AA+IKWIEAEKGVIVTNHSLLVTFNGS DH++IDATSVQNLEIIEPLHSNLWG+
Sbjct: 107  LCLAAAAASIKWIEAEKGVIVTNHSLLVTFNGSSDHVSIDATSVQNLEIIEPLHSNLWGT 166

Query: 768  SNKKRSLFHMLKXXXXXXXXXXXRANLLQPLKDIETINARLDCLDELMSNEELFFGLTQV 589
            SNKKRSL++MLK           RANLLQPLKDIETINARLDCLDELMSNE+LFFGL+Q 
Sbjct: 167  SNKKRSLYNMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQLFFGLSQA 226

Query: 588  LRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXXXXXXXXLSKVLK 409
            LR+FPKETDRVLCHFCFK KKVTNEVL   DAK+SQ LISSII           LSKVLK
Sbjct: 227  LRKFPKETDRVLCHFCFKQKKVTNEVLHPSDAKKSQNLISSIILLKTALEALPLLSKVLK 286

Query: 408  DAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQCFAVKAGIDGLL 229
            +AKSFLL NIYKSICENEKY +IRKRIGEVID+DVLHAR+PF+ARTQQCFAVKAGIDGLL
Sbjct: 287  EAKSFLLANIYKSICENEKYTNIRKRIGEVIDEDVLHARVPFIARTQQCFAVKAGIDGLL 346

Query: 228  DVARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNKQGFYLSIPQKDIKGRLPSKFIQV 49
            D+ARR+FCD+SEAIH+LAN YRE+++L NLK+PFNN+QGFYLSIP KD++G+LP+KFIQV
Sbjct: 347  DIARRTFCDTSEAIHNLANKYREEYKLSNLKLPFNNRQGFYLSIPHKDVQGKLPNKFIQV 406

Query: 48   VKHGNNVHCSTLELAS 1
            +KHGNN+ CSTLELAS
Sbjct: 407  LKHGNNIRCSTLELAS 422


>ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glycine max]
          Length = 794

 Score =  481 bits (1237), Expect = e-133
 Identities = 239/316 (75%), Positives = 269/316 (85%)
 Frame = -1

Query: 948  LCLAAVAATIKWIEAEKGVIVTNHSLLVTFNGSFDHMNIDATSVQNLEIIEPLHSNLWGS 769
            LCLAA AAT+KW EAEKGV+VTNHSL VTFNGSFDHMNID+TS+QNLEIIEP HS L G+
Sbjct: 129  LCLAAAAATLKWTEAEKGVVVTNHSLSVTFNGSFDHMNIDSTSIQNLEIIEPFHSTLLGT 188

Query: 768  SNKKRSLFHMLKXXXXXXXXXXXRANLLQPLKDIETINARLDCLDELMSNEELFFGLTQV 589
            SNKKRSLFHMLK           RANLLQPLKDIETINARLDCLDELMSNE+LFFGL Q+
Sbjct: 189  SNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQLFFGLCQI 248

Query: 588  LRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXXXXXXXXLSKVLK 409
            LR+FPKETDRVLCHFCFK KKVT E L V  AK+SQVL+SS+I           LSKVLK
Sbjct: 249  LRKFPKETDRVLCHFCFKAKKVTAEALAVDRAKKSQVLVSSVILLKTALDALPLLSKVLK 308

Query: 408  DAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQCFAVKAGIDGLL 229
            D KS LL NIYKS+CENEKY  IRKRIGEVID+DVLHAR+PFVA TQQCFAVKAGIDGLL
Sbjct: 309  DVKSSLLSNIYKSVCENEKYDLIRKRIGEVIDEDVLHARVPFVACTQQCFAVKAGIDGLL 368

Query: 228  DVARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNKQGFYLSIPQKDIKGRLPSKFIQV 49
            D++RR+FC++SEAIH+LAN YREDF+LPNLK+ + N+QGF+  IPQK+I+G+LPSKFIQV
Sbjct: 369  DISRRAFCETSEAIHNLANNYREDFKLPNLKLTYKNRQGFHFVIPQKNIQGKLPSKFIQV 428

Query: 48   VKHGNNVHCSTLELAS 1
            VKHGNN+ CS+LELAS
Sbjct: 429  VKHGNNIRCSSLELAS 444


>ref|XP_002262998.2| PREDICTED: mutS protein homolog 4-like, partial [Vitis vinifera]
          Length = 456

 Score =  480 bits (1235), Expect = e-133
 Identities = 245/328 (74%), Positives = 276/328 (84%), Gaps = 12/328 (3%)
 Frame = -1

Query: 948  LCLAAVAATIKWI--------EAEKGVIVTNHS----LLVTFNGSFDHMNIDATSVQNLE 805
            LCLAA AATIK I        + +  ++    S    ++VTFNGSFDHMNIDATSVQNLE
Sbjct: 129  LCLAAAAATIKCIAFFFPKDVKLQYAILEDLSSCDKLMMVTFNGSFDHMNIDATSVQNLE 188

Query: 804  IIEPLHSNLWGSSNKKRSLFHMLKXXXXXXXXXXXRANLLQPLKDIETINARLDCLDELM 625
            IIEPLHS+LWG+SNKKRSLFHMLK           RANLLQPLKDIETINARLDCLDELM
Sbjct: 189  IIEPLHSSLWGTSNKKRSLFHMLKTTKTTGGTRLLRANLLQPLKDIETINARLDCLDELM 248

Query: 624  SNEELFFGLTQVLRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXX 445
            SNE+LFFGL+QVLR+FPKETDRVLCHFCFKPKKVT EVL V  A+++Q+LISSII     
Sbjct: 249  SNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTKEVLGVEYARKNQMLISSIILLKTA 308

Query: 444  XXXXXXLSKVLKDAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQ 265
                  LSKVLKDAKSFLL N+YKS+C NE YASIRKRIGEVID+DVLHAR+PFVARTQQ
Sbjct: 309  LDALPLLSKVLKDAKSFLLANVYKSVCANETYASIRKRIGEVIDEDVLHARVPFVARTQQ 368

Query: 264  CFAVKAGIDGLLDVARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNKQGFYLSIPQKD 85
            CFAVKAGIDGLLD+ARRSFCD+SEAIH+LAN YREDF+LPNLK+PFNN+QGFY +IPQKD
Sbjct: 369  CFAVKAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRQGFYFTIPQKD 428

Query: 84   IKGRLPSKFIQVVKHGNNVHCSTLELAS 1
            I+G+LPSKFIQV++HGNN+HCSTLELAS
Sbjct: 429  IQGKLPSKFIQVLRHGNNIHCSTLELAS 456


>ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
            gi|395406788|sp|F4JP48.1|MSH4_ARATH RecName: Full=DNA
            mismatch repair protein MSH4; Short=AtMSH4; AltName:
            Full=MutS protein homolog 4 gi|332658482|gb|AEE83882.1|
            DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
          Length = 792

 Score =  475 bits (1222), Expect = e-132
 Identities = 232/316 (73%), Positives = 269/316 (85%)
 Frame = -1

Query: 948  LCLAAVAATIKWIEAEKGVIVTNHSLLVTFNGSFDHMNIDATSVQNLEIIEPLHSNLWGS 769
            L LAA AATIKWIEAEKGVIVTNHSL VTFNGSFDHMNIDATSV+NLE+I+P H+ L G+
Sbjct: 129  LSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDPFHNALLGT 188

Query: 768  SNKKRSLFHMLKXXXXXXXXXXXRANLLQPLKDIETINARLDCLDELMSNEELFFGLTQV 589
            SNKKRSLF M K           RANLLQPLKDIETIN RLDCLDELMSNE+LFFGL+QV
Sbjct: 189  SNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQV 248

Query: 588  LRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXXXXXXXXLSKVLK 409
            LR+FPKETDRVLCHFCFKPKKVT  V+   + ++SQ +ISSII           L+KVLK
Sbjct: 249  LRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQNMISSIILLKTALDALPILAKVLK 308

Query: 408  DAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQCFAVKAGIDGLL 229
            DAK FLL N+YKS+CEN++YASIRK+IGEVIDDDVLHAR+PFVARTQQCFA+KAGIDG L
Sbjct: 309  DAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQCFALKAGIDGFL 368

Query: 228  DVARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNKQGFYLSIPQKDIKGRLPSKFIQV 49
            D+ARR+FCD+SEAIH+LA+ YRE+F LPNLK+PFNN+QGF+  IPQK+++G+LP+KF QV
Sbjct: 369  DIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQV 428

Query: 48   VKHGNNVHCSTLELAS 1
            VKHG N+HCS+LELAS
Sbjct: 429  VKHGKNIHCSSLELAS 444


>ref|XP_002870107.1| hypothetical protein ARALYDRAFT_493139 [Arabidopsis lyrata subsp.
            lyrata] gi|297315943|gb|EFH46366.1| hypothetical protein
            ARALYDRAFT_493139 [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score =  475 bits (1222), Expect = e-132
 Identities = 232/316 (73%), Positives = 269/316 (85%)
 Frame = -1

Query: 948  LCLAAVAATIKWIEAEKGVIVTNHSLLVTFNGSFDHMNIDATSVQNLEIIEPLHSNLWGS 769
            L LAA AATIKWIEAEKGVIVTNHSL +TFNGSFDHMNIDATSV+NLEII+P H+ L G+
Sbjct: 129  LSLAAAAATIKWIEAEKGVIVTNHSLTITFNGSFDHMNIDATSVENLEIIDPFHNALLGT 188

Query: 768  SNKKRSLFHMLKXXXXXXXXXXXRANLLQPLKDIETINARLDCLDELMSNEELFFGLTQV 589
            SNKKRSLF M K           RANLLQPLKDIETIN RLDCLDELMSNE+LFFGL+QV
Sbjct: 189  SNKKRSLFQMFKTTKTVGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQV 248

Query: 588  LRRFPKETDRVLCHFCFKPKKVTNEVLRVGDAKRSQVLISSIIXXXXXXXXXXXLSKVLK 409
            LR+FP+ETDRVLCHFCFKPKKVT  V+   + +RSQ +ISSII           L+KVLK
Sbjct: 249  LRKFPQETDRVLCHFCFKPKKVTEAVIGFENTRRSQNMISSIILLKTALDALPLLAKVLK 308

Query: 408  DAKSFLLGNIYKSICENEKYASIRKRIGEVIDDDVLHARIPFVARTQQCFAVKAGIDGLL 229
            DAK FLL N+YKS+CEN++YASIRK+IGEVIDDDVLHAR+PFVARTQQCFA+KAGIDG L
Sbjct: 309  DAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQCFALKAGIDGFL 368

Query: 228  DVARRSFCDSSEAIHSLANTYREDFQLPNLKIPFNNKQGFYLSIPQKDIKGRLPSKFIQV 49
            D+ARR+FCD+SEAIH+LA+ YRE+F LPNLK+PFNN+QGF+  IPQK+++G+LP+KF QV
Sbjct: 369  DIARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQV 428

Query: 48   VKHGNNVHCSTLELAS 1
            VKHG N+HCS+LELAS
Sbjct: 429  VKHGKNIHCSSLELAS 444