BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014258
         (1009 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]     283   2e-88
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7...   280   1e-87
gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]    280   1e-87
ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabido...   280   2e-87
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]                    280   4e-87

>dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]
          Length = 379

 Score =  283 bits (724), Expect(2) = 2e-88
 Identities = 140/186 (75%), Positives = 164/186 (88%)
 Frame = +1

Query: 178 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 357
           MA+++++QQ QP+            G + +  +QYK+KV+ +P+ AL V+ASS KKILIM
Sbjct: 1   MAKIMMLQQSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVY-QPKGALYVSASSEKKILIM 59

Query: 358 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 537
           GGTRFIG+FLSRLLVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60  GGTRFIGVFLSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 538 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 717
           DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH EVD
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVD 179

Query: 718 AVDPKS 735
           AVDPKS
Sbjct: 180 AVDPKS 185



 Score = 70.5 bits (171), Expect(2) = 2e-88
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 839 TENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWF 937
           TE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWF
Sbjct: 193 TESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWF 225


>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
           gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
           Full=Chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic; Short=CSP41-b; AltName:
           Full=Heteroglycan-interacting protein 1.3; AltName:
           Full=Protein CHLOROPLAST RNA BINDING; AltName:
           Full=Protein Gb5f; Flags: Precursor
           gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
           [Arabidopsis thaliana]
           gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
           [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
           Identical to gb|Y10557 g5bf gene from Arabidopsis
           thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
           gb|T22425, gb|N64934 and gb|T46767 come from this gene
           [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|17979099|gb|AAL47493.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
           binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  280 bits (716), Expect(2) = 1e-87
 Identities = 139/186 (74%), Positives = 163/186 (87%)
 Frame = +1

Query: 178 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 357
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 358 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 537
           GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60  GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 538 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 717
           DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 718 AVDPKS 735
           AVDPKS
Sbjct: 180 AVDPKS 185



 Score = 70.5 bits (171), Expect(2) = 1e-87
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 839 TENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWF 937
           TE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWF
Sbjct: 193 TESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWF 225


>gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  280 bits (716), Expect(2) = 1e-87
 Identities = 139/186 (74%), Positives = 163/186 (87%)
 Frame = +1

Query: 178 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 357
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 358 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 537
           GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60  GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 538 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 717
           DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 718 AVDPKS 735
           AVDPKS
Sbjct: 180 AVDPKS 185



 Score = 70.5 bits (171), Expect(2) = 1e-87
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 839 TENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWF 937
           TE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWF
Sbjct: 193 TESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWF 225


>ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp.
           lyrata] gi|297335585|gb|EFH66002.1| catalytic/ coenzyme
           binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 378

 Score =  280 bits (715), Expect(2) = 2e-87
 Identities = 139/186 (74%), Positives = 162/186 (87%)
 Frame = +1

Query: 178 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 357
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALHVSASSEKKILIM 59

Query: 358 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 537
           GGTRFIG+FLSRLLVK GHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60  GGTRFIGVFLSRLLVKGGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 538 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 717
           DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 718 AVDPKS 735
           AVDPKS
Sbjct: 180 AVDPKS 185



 Score = 70.5 bits (171), Expect(2) = 2e-87
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +2

Query: 839 TENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWF 937
           TE+LLQS+ VNWTSIRPVYIYGPLNYNPVEEWF
Sbjct: 193 TESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWF 225


>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
          Length = 378

 Score =  280 bits (716), Expect(2) = 4e-87
 Identities = 139/186 (74%), Positives = 163/186 (87%)
 Frame = +1

Query: 178 MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVWHKPRSALQVTASSAKKILIM 357
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 358 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 537
           GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60  GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 538 DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHVEVD 717
           DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120 DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 718 AVDPKS 735
           AVDPKS
Sbjct: 180 AVDPKS 185



 Score = 68.9 bits (167), Expect(2) = 4e-87
 Identities = 29/33 (87%), Positives = 32/33 (96%)
 Frame = +2

Query: 839 TENLLQSRDVNWTSIRPVYIYGPLNYNPVEEWF 937
           TE+LLQS+ VNWTSIRPVYIYGPLNYNPVE+WF
Sbjct: 193 TESLLQSKGVNWTSIRPVYIYGPLNYNPVEKWF 225