BLASTX nr result
ID: Coptis25_contig00014223
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00014223 (304 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi... 127 1e-27 emb|CBI41082.3| unnamed protein product [Vitis vinifera] 122 2e-26 ref|XP_002512787.1| pentatricopeptide repeat-containing protein,... 70 2e-10 ref|XP_002884496.1| pentatricopeptide repeat-containing protein ... 67 2e-09 ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th... 67 2e-09 >ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera] Length = 640 Score = 127 bits (318), Expect = 1e-27 Identities = 60/87 (68%), Positives = 73/87 (83%) Frame = -2 Query: 261 IEQKIMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIF 82 I +K+MSLLQ +TK + +IQIHA ++KTSL NNF+LAKLLR++F+CSS +L YAR +F Sbjct: 2 IGKKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVF 61 Query: 81 DEIQSPDTFIWNTMIRAYLNVPNPQES 1 DEI SPDTFIWNTMIRAYLN NPQES Sbjct: 62 DEIPSPDTFIWNTMIRAYLNSQNPQES 88 >emb|CBI41082.3| unnamed protein product [Vitis vinifera] Length = 413 Score = 122 bits (307), Expect = 2e-26 Identities = 58/82 (70%), Positives = 69/82 (84%) Frame = -2 Query: 246 MSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIFDEIQS 67 MSLLQ +TK + +IQIHA ++KTSL NNF+LAKLLR++F+CSS +L YAR +FDEI S Sbjct: 1 MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 60 Query: 66 PDTFIWNTMIRAYLNVPNPQES 1 PDTFIWNTMIRAYLN NPQES Sbjct: 61 PDTFIWNTMIRAYLNSQNPQES 82 >ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 480 Score = 70.1 bits (170), Expect = 2e-10 Identities = 36/93 (38%), Positives = 58/93 (62%) Frame = -2 Query: 279 NHQTKTIEQKIMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQ 100 N++ K Q+ ++LLQ+ + F H+ + A +++ +LS + ++ KLLR C S + + Sbjct: 25 NNKPKFGSQEALNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLLRL---CFSYQKVD 81 Query: 99 YARYIFDEIQSPDTFIWNTMIRAYLNVPNPQES 1 YA IFD+IQ+P TF WN MIRAY N Q++ Sbjct: 82 YATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQA 114 >ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 547 Score = 66.6 bits (161), Expect = 2e-09 Identities = 31/83 (37%), Positives = 48/83 (57%) Frame = -2 Query: 249 IMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIFDEIQ 70 I+S L+ L Q+H ++K+S+ N L++L+ +C NL YAR +F+ I Sbjct: 8 ILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 67 Query: 69 SPDTFIWNTMIRAYLNVPNPQES 1 P +IWN+MIR Y N PNP ++ Sbjct: 68 CPSVYIWNSMIRGYSNSPNPDKA 90 >ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana] gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g05240 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana] Length = 565 Score = 66.6 bits (161), Expect = 2e-09 Identities = 31/83 (37%), Positives = 48/83 (57%) Frame = -2 Query: 249 IMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIFDEIQ 70 I+S L+ L Q+H ++K+S+ N L++L+ +C NL YAR +F+ I Sbjct: 9 ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68 Query: 69 SPDTFIWNTMIRAYLNVPNPQES 1 P +IWN+MIR Y N PNP ++ Sbjct: 69 CPSVYIWNSMIRGYSNSPNPDKA 91