BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014223
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              122   2e-26
ref|XP_002512787.1| pentatricopeptide repeat-containing protein,...    70   2e-10
ref|XP_002884496.1| pentatricopeptide repeat-containing protein ...    67   2e-09
ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th...    67   2e-09

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  127 bits (318), Expect = 1e-27
 Identities = 60/87 (68%), Positives = 73/87 (83%)
 Frame = -2

Query: 261 IEQKIMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIF 82
           I +K+MSLLQ +TK + +IQIHA ++KTSL  NNF+LAKLLR++F+CSS  +L YAR +F
Sbjct: 2   IGKKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVF 61

Query: 81  DEIQSPDTFIWNTMIRAYLNVPNPQES 1
           DEI SPDTFIWNTMIRAYLN  NPQES
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQES 88


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  122 bits (307), Expect = 2e-26
 Identities = 58/82 (70%), Positives = 69/82 (84%)
 Frame = -2

Query: 246 MSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIFDEIQS 67
           MSLLQ +TK + +IQIHA ++KTSL  NNF+LAKLLR++F+CSS  +L YAR +FDEI S
Sbjct: 1   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 60

Query: 66  PDTFIWNTMIRAYLNVPNPQES 1
           PDTFIWNTMIRAYLN  NPQES
Sbjct: 61  PDTFIWNTMIRAYLNSQNPQES 82


>ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547798|gb|EEF49290.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 480

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 36/93 (38%), Positives = 58/93 (62%)
 Frame = -2

Query: 279 NHQTKTIEQKIMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQ 100
           N++ K   Q+ ++LLQ+ + F H+  + A +++ +LS +  ++ KLLR    C S + + 
Sbjct: 25  NNKPKFGSQEALNLLQKGSNFTHVKLVQAKIIRNNLSDDQLLVRKLLRL---CFSYQKVD 81

Query: 99  YARYIFDEIQSPDTFIWNTMIRAYLNVPNPQES 1
           YA  IFD+IQ+P TF WN MIRAY    N Q++
Sbjct: 82  YATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQA 114


>ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330336|gb|EFH60755.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 547

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/83 (37%), Positives = 48/83 (57%)
 Frame = -2

Query: 249 IMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIFDEIQ 70
           I+S L+       L Q+H  ++K+S+  N   L++L+    +C    NL YAR +F+ I 
Sbjct: 8   ILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 67

Query: 69  SPDTFIWNTMIRAYLNVPNPQES 1
            P  +IWN+MIR Y N PNP ++
Sbjct: 68  CPSVYIWNSMIRGYSNSPNPDKA 90


>ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
           gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g05240 gi|332640689|gb|AEE74210.1|
           mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 31/83 (37%), Positives = 48/83 (57%)
 Frame = -2

Query: 249 IMSLLQESTKFDHLIQIHAYVVKTSLSVNNFILAKLLRQIFSCSSLKNLQYARYIFDEIQ 70
           I+S L+       L Q+H  ++K+S+  N   L++L+    +C    NL YAR +F+ I 
Sbjct: 9   ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68

Query: 69  SPDTFIWNTMIRAYLNVPNPQES 1
            P  +IWN+MIR Y N PNP ++
Sbjct: 69  CPSVYIWNSMIRGYSNSPNPDKA 91