BLASTX nr result
ID: Coptis25_contig00014120
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00014120
(1570 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containi... 500 e-139
emb|CBI22850.3| unnamed protein product [Vitis vinifera] 496 e-138
ref|XP_002314968.1| predicted protein [Populus trichocarpa] gi|2... 463 e-128
ref|XP_002519267.1| pentatricopeptide repeat-containing protein,... 455 e-125
ref|XP_003589699.1| Pentatricopeptide repeat-containing protein ... 454 e-125
>ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like
[Vitis vinifera]
Length = 666
Score = 500 bits (1288), Expect = e-139
Identities = 244/387 (63%), Positives = 290/387 (74%)
Frame = -2
Query: 1569 RGISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYE 1390
+GI PNV++YTTI+NAL++ G+VELSL VL +MF GCSPN+HTFTSLIKG F KG +E
Sbjct: 275 KGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHE 334
Query: 1389 ALDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVID 1210
ALD W RM+REG PNVVAYN+LMHGLCS LG AVSVFNQM+ GC PNV TYS +ID
Sbjct: 335 ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394
Query: 1209 GFAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPP 1030
G+AK GDL+ A+E+WN MIT CHPNVV TCMVDVLCRN MF+QA LIENM + PP
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454
Query: 1029 NTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLV 850
NTVTFN FIKGLC +GR+DWA+KVFD+M GC P +TYNELLD L K+ GEA GLV
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLV 514
Query: 849 REMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQ 670
++ME G+E NLVTYNT+I G C A M+ EAL+ L KMVVRG +PD IT N +I AYCKQ
Sbjct: 515 KDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQ 574
Query: 669 GKVKSAIDANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATW 490
GKV AI ++ + H D+I +TSLISG+C ++EA+ YL +ML EG P VATW
Sbjct: 575 GKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATW 634
Query: 489 NVLVRSLFSKMGSLGPTQLLDDILENG 409
NVLVR LFS MG G Q LD +L +G
Sbjct: 635 NVLVRHLFSNMGHSGAVQFLDAVLGSG 661
Score = 160 bits (404), Expect = 1e-36
Identities = 99/404 (24%), Positives = 183/404 (45%), Gaps = 19/404 (4%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
GIS + + +++ + G E +L RM P + + ++ +
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165
Query: 1386 LDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDG 1207
++ M ++G EPNV YN L+ LC + ++ A + +M GC P+ +Y+T+I
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225
Query: 1206 FAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPPN 1027
K G ++ A E + S P+V V +++ +C+ F++A L++ M PN
Sbjct: 226 LCKLGKVKEARE-----LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPN 280
Query: 1026 TVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLVR 847
+++ I L AG ++ ++ V +M GC+P + T+ L+ G F + EA
Sbjct: 281 VISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWD 340
Query: 846 EMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQG 667
M GV N+V YN ++ GLC + +A+ +M + G P+ T++ +I Y K G
Sbjct: 341 RMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400
Query: 666 KVKSAIDANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATWN 487
+ A + M + CH +++ +T ++ LC +A + M E P T+N
Sbjct: 401 DLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFN 460
Query: 486 VLVRSL------------FSKMGSLG-------PTQLLDDILEN 412
++ L F +MG+ G +LLD +L++
Sbjct: 461 TFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKD 504
Score = 141 bits (356), Expect = 4e-31
Identities = 87/319 (27%), Positives = 150/319 (47%), Gaps = 36/319 (11%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
G+ PNVV Y +++ L + +++V +M ++GC PN+ T+++LI G + G + A
Sbjct: 346 GVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGA 405
Query: 1386 LDVWKRMLREGYEPNVVAY-----------------------------------NSLMHG 1312
+VW M+ G PNVVAY N+ + G
Sbjct: 406 SEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKG 465
Query: 1311 LCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDGFAKTGDLENATEIWNEMITRSCHPN 1132
LC SG++ A+ VF+QM GC PN TTY+ ++D K A + +M R N
Sbjct: 466 LCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELN 525
Query: 1131 VVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFD 952
+V ++ C M +A L+ M + P+ +T N+ I C G+++ A+++ D
Sbjct: 526 LVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMD 585
Query: 951 EMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLVREMEDGGVEFNLVTYNTVIGGLCFAN 772
+ P + Y L+ G+ + EA +R M G+ N+ T+N ++ L F+N
Sbjct: 586 RLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL-FSN 644
Query: 771 MVNE-ALQYLAKMVVRGIQ 718
M + A+Q+L ++ G +
Sbjct: 645 MGHSGAVQFLDAVLGSGFE 663
Score = 127 bits (320), Expect = 6e-27
Identities = 96/341 (28%), Positives = 149/341 (43%), Gaps = 19/341 (5%)
Frame = -2
Query: 1410 QKGSVYEALDVWKRMLRE-----------------GYEPNVVAYNSLMHGLCSSGKLGMA 1282
+K SV + DV KR+ E ++ + Y ++ L S ++
Sbjct: 36 EKSSVLKEADVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCV 95
Query: 1281 VSVFNQMKEYGCVPNVTTYSTVIDGFAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDV 1102
+ QMK G + + +VI + + G E A + + M P V + ++D
Sbjct: 96 QYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDA 155
Query: 1101 LCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPT 922
L F + NM PN T+N+ +K LC R+D A K+ EM GC P
Sbjct: 156 LLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPD 215
Query: 921 VSTYNELLDGLFKEHNLGEASGLVREMEDGGVEF--NLVTYNTVIGGLCFANMVNEALQY 748
+Y L+ L K G V+E + + F ++ YN +I G+C EA Q
Sbjct: 216 EVSYTTLISSLCK-------LGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQL 268
Query: 747 LAKMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISGLCE 568
L +M+ +GI P+ I++ TII A G V+ ++ M C +L T TSLI G
Sbjct: 269 LDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFL 328
Query: 567 WFTLKEAMTYLFKMLKEGTFPCVATWNVLVRSLFSKMGSLG 445
EA+ + +M++EG P V +N L+ L SK SLG
Sbjct: 329 KGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKR-SLG 368
>emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 496 bits (1278), Expect = e-138
Identities = 242/381 (63%), Positives = 286/381 (75%)
Frame = -2
Query: 1569 RGISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYE 1390
+GI PNV++YTTI+NAL++ G+VELSL VL +MF GCSPN+HTFTSLIKG F KG +E
Sbjct: 275 KGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHE 334
Query: 1389 ALDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVID 1210
ALD W RM+REG PNVVAYN+LMHGLCS LG AVSVFNQM+ GC PNV TYS +ID
Sbjct: 335 ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394
Query: 1209 GFAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPP 1030
G+AK GDL+ A+E+WN MIT CHPNVV TCMVDVLCRN MF+QA LIENM + PP
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454
Query: 1029 NTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLV 850
NTVTFN FIKGLC +GR+DWA+KVFD+M GC P +TYNELLD L K+ GEA GLV
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLV 514
Query: 849 REMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQ 670
++ME G+E NLVTYNT+I G C A M+ EAL+ L KMVVRG +PD IT N +I AYCKQ
Sbjct: 515 KDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQ 574
Query: 669 GKVKSAIDANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATW 490
GKV AI ++ + H D+I +TSLISG+C ++EA+ YL +ML EG P VATW
Sbjct: 575 GKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATW 634
Query: 489 NVLVRSLFSKMGSLGPTQLLD 427
NVLVR LFS MG G Q LD
Sbjct: 635 NVLVRHLFSNMGHSGAVQFLD 655
Score = 160 bits (404), Expect = 1e-36
Identities = 99/404 (24%), Positives = 183/404 (45%), Gaps = 19/404 (4%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
GIS + + +++ + G E +L RM P + + ++ +
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165
Query: 1386 LDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDG 1207
++ M ++G EPNV YN L+ LC + ++ A + +M GC P+ +Y+T+I
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225
Query: 1206 FAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPPN 1027
K G ++ A E + S P+V V +++ +C+ F++A L++ M PN
Sbjct: 226 LCKLGKVKEARE-----LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPN 280
Query: 1026 TVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLVR 847
+++ I L AG ++ ++ V +M GC+P + T+ L+ G F + EA
Sbjct: 281 VISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWD 340
Query: 846 EMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQG 667
M GV N+V YN ++ GLC + +A+ +M + G P+ T++ +I Y K G
Sbjct: 341 RMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400
Query: 666 KVKSAIDANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATWN 487
+ A + M + CH +++ +T ++ LC +A + M E P T+N
Sbjct: 401 DLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFN 460
Query: 486 VLVRSL------------FSKMGSLG-------PTQLLDDILEN 412
++ L F +MG+ G +LLD +L++
Sbjct: 461 TFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKD 504
Score = 127 bits (320), Expect = 6e-27
Identities = 96/341 (28%), Positives = 149/341 (43%), Gaps = 19/341 (5%)
Frame = -2
Query: 1410 QKGSVYEALDVWKRMLRE-----------------GYEPNVVAYNSLMHGLCSSGKLGMA 1282
+K SV + DV KR+ E ++ + Y ++ L S ++
Sbjct: 36 EKSSVLKEADVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCV 95
Query: 1281 VSVFNQMKEYGCVPNVTTYSTVIDGFAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDV 1102
+ QMK G + + +VI + + G E A + + M P V + ++D
Sbjct: 96 QYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDA 155
Query: 1101 LCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPT 922
L F + NM PN T+N+ +K LC R+D A K+ EM GC P
Sbjct: 156 LLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPD 215
Query: 921 VSTYNELLDGLFKEHNLGEASGLVREMEDGGVEF--NLVTYNTVIGGLCFANMVNEALQY 748
+Y L+ L K G V+E + + F ++ YN +I G+C EA Q
Sbjct: 216 EVSYTTLISSLCK-------LGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQL 268
Query: 747 LAKMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISGLCE 568
L +M+ +GI P+ I++ TII A G V+ ++ M C +L T TSLI G
Sbjct: 269 LDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFL 328
Query: 567 WFTLKEAMTYLFKMLKEGTFPCVATWNVLVRSLFSKMGSLG 445
EA+ + +M++EG P V +N L+ L SK SLG
Sbjct: 329 KGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKR-SLG 368
>ref|XP_002314968.1| predicted protein [Populus trichocarpa] gi|222864008|gb|EEF01139.1|
predicted protein [Populus trichocarpa]
Length = 662
Score = 463 bits (1191), Expect = e-128
Identities = 223/387 (57%), Positives = 288/387 (74%), Gaps = 1/387 (0%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
GI P+V+TY+T++N L+E G+VE++L VL +MF+ GCSPN+HTFTSL+KG F G + EA
Sbjct: 273 GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEA 332
Query: 1386 LDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDG 1207
LD+W RM++EG EPN VAYN+L+HGLCS GK+ AVSV +M+ G PN TTYST+IDG
Sbjct: 333 LDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDG 392
Query: 1206 FAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPPN 1027
FAK GDL A+EIWN+MIT C PNVVV TCMVDVLCRN MF+ A LIENMA PPN
Sbjct: 393 FAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPN 452
Query: 1026 TVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLVR 847
T+TFN FIKGLC +G+ +WA+KV ++M +YGCAP V+TYNE+LDGLF EA +V
Sbjct: 453 TITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVG 512
Query: 846 EMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQG 667
E+E+ ++ NLVTYNT++ G C A M ALQ K++V G +PD+IT+NT+I AYCKQG
Sbjct: 513 EIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQG 572
Query: 666 KVKSAID-ANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATW 490
+VK+AI +RL + D+ T+TSL+ G+C W + EA+ +L KM+ EG P ATW
Sbjct: 573 EVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATW 632
Query: 489 NVLVRSLFSKMGSLGPTQLLDDILENG 409
N LVR LFSK+G LGP ++D+IL NG
Sbjct: 633 NALVRGLFSKLGHLGPIHIVDNILANG 659
Score = 163 bits (412), Expect = 1e-37
Identities = 100/366 (27%), Positives = 168/366 (45%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
GIS N + ++NA G E +L R+ GC P++ + ++ +
Sbjct: 103 GISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMI 162
Query: 1386 LDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDG 1207
++ M R+G E NV YN L+ LC + ++ A + +M GC+P+ +Y+TV+
Sbjct: 163 NGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSS 222
Query: 1206 FAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPPN 1027
+ G +E A E+ M +S P V +++ CR ++ L MA+ P+
Sbjct: 223 MCRLGKVEEAREL--SMRIKSFVP---VYNALINGFCREHKMEEVFELFNEMAVEGIDPD 277
Query: 1026 TVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLVR 847
+T++ I L G ++ A+ V +M GC+P V T+ L+ G F L EA L
Sbjct: 278 VITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWN 337
Query: 846 EMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQG 667
M G E N V YNT+I GLC + EA+ KM G+ P+ T++T+I + K G
Sbjct: 338 RMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAG 397
Query: 666 KVKSAIDANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATWN 487
+ A + M C +++ +T ++ LC A+ + M P T+N
Sbjct: 398 DLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFN 457
Query: 486 VLVRSL 469
++ L
Sbjct: 458 TFIKGL 463
Score = 112 bits (280), Expect = 3e-22
Identities = 66/224 (29%), Positives = 117/224 (52%)
Frame = -2
Query: 1119 TCMVDVLCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEK 940
T M+ L D Q+L++ M L N F + I AG + A+K F + +
Sbjct: 77 TTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGE 136
Query: 939 YGCAPTVSTYNELLDGLFKEHNLGEASGLVREMEDGGVEFNLVTYNTVIGGLCFANMVNE 760
+GC P+V YN +LD L E+ +G+ M+ G+E N+ TYN ++ LC + V+
Sbjct: 137 FGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDA 196
Query: 759 ALQYLAKMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLIS 580
A + LA+M +G PD +++ T++ + C+ GKV+ A + + R + + + +LI+
Sbjct: 197 ARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELS-----MRIKSFVPVYNALIN 251
Query: 579 GLCEWFTLKEAMTYLFKMLKEGTFPCVATWNVLVRSLFSKMGSL 448
G C ++E +M EG P V T++ ++ +L S+MG++
Sbjct: 252 GFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTL-SEMGNV 294
>ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541582|gb|EEF43131.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 665
Score = 455 bits (1171), Expect = e-125
Identities = 219/388 (56%), Positives = 288/388 (74%), Gaps = 1/388 (0%)
Frame = -2
Query: 1569 RGISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYE 1390
+GI PNV+TY+T++++L+ G+VEL+L V +MFV GCSPN++TFTSL+KG F +G V E
Sbjct: 278 KGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLE 337
Query: 1389 ALDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVID 1210
AL++W RM EG+EPNVVAYN+L+HGLCS GK+G AVSV ++M+ GC PNV+TY +ID
Sbjct: 338 ALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALID 397
Query: 1209 GFAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPP 1030
GFAK GDL A+EIWN+M+T C PNVVV T MV+VLCR+ MF QA LIE M+ PP
Sbjct: 398 GFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPP 457
Query: 1029 NTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLV 850
NTVTFN FIKGLC +GR++ A+ +F +ME+YGC+P + TYNE+LDGL KE+ + EA LV
Sbjct: 458 NTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELV 517
Query: 849 REMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQ 670
EME+ G+E NLVTYNT+ GG C EAL+ L KM+V G++PD IT+NT+ AYC Q
Sbjct: 518 TEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQ 577
Query: 669 GKVKSAID-ANRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVAT 493
GKVK+AI ++L G + ++ +TSL+ G+C ++EA+ YL KML EG AT
Sbjct: 578 GKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAAT 637
Query: 492 WNVLVRSLFSKMGSLGPTQLLDDILENG 409
WN LVR LF+ +G LGP +LDDIL +G
Sbjct: 638 WNALVRGLFNSLGHLGPIHILDDILTSG 665
Score = 177 bits (448), Expect = 9e-42
Identities = 104/367 (28%), Positives = 177/367 (48%), Gaps = 1/367 (0%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
GIS + + ++N G E +L + R+ GC P + + L+ +
Sbjct: 109 GISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMI 168
Query: 1386 LDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDG 1207
++ M R+G EPNV YN L+ LC + ++ A + +M GC P+V +Y+TVI
Sbjct: 169 EPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISS 228
Query: 1206 FAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPPN 1027
+K G +E A E ++ PNV V +++ CR + L+ M PN
Sbjct: 229 MSKLGKVEEARE-----LSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPN 283
Query: 1026 TVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLVR 847
+T++ I L G ++ A+ V+ +M GC+P V T+ L+ G F + EA +
Sbjct: 284 VITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWN 343
Query: 846 EMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQG 667
M + G E N+V YNT+I GLC + EA+ +KM G P+ T+ +I + K G
Sbjct: 344 RMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403
Query: 666 KVKSAIDA-NRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVATW 490
+ A + N++MT C +++ +TS+++ LC +A + + KM + P T+
Sbjct: 404 DLVGASEIWNKMMTN-GCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTF 462
Query: 489 NVLVRSL 469
N ++ L
Sbjct: 463 NTFIKGL 469
Score = 109 bits (272), Expect = 2e-21
Identities = 64/215 (29%), Positives = 111/215 (51%)
Frame = -2
Query: 1113 MVDVLCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYG 934
M++ L R D Q+L++ M L + F I G + A+K+F + ++G
Sbjct: 85 MIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFG 144
Query: 933 CAPTVSTYNELLDGLFKEHNLGEASGLVREMEDGGVEFNLVTYNTVIGGLCFANMVNEAL 754
C PTV YN LLD + E+ + M+ G E N+ TYN ++ LC N V+ A
Sbjct: 145 CQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGAC 204
Query: 753 QYLAKMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISGL 574
+ L +M +G +PD +++ T+I + K GKV+ A + + R ++ + +LI+G
Sbjct: 205 KLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELS-----IRFQPNVSVYNALINGF 259
Query: 573 CEWFTLKEAMTYLFKMLKEGTFPCVATWNVLVRSL 469
C + +KE L +M+++G P V T++ ++ SL
Sbjct: 260 CREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSL 294
>ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 806
Score = 454 bits (1168), Expect = e-125
Identities = 219/385 (56%), Positives = 282/385 (73%), Gaps = 1/385 (0%)
Frame = -2
Query: 1569 RGISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYE 1390
RG+ PNV++Y+T+++ L++ G+VELSL V GRMFV GC PN+ TFTSLIKG F +G V +
Sbjct: 273 RGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGD 332
Query: 1389 ALDVWKRMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVID 1210
A+ +W M+REG PNVVAYN+L+HGLCS G + A+SV+NQM++ PNVTTYST+I
Sbjct: 333 AVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIY 392
Query: 1209 GFAKTGDLENATEIWNEMITRSCHPNVVVLTCMVDVLCRNLMFDQAQWLIENMALHKNPP 1030
GFAK+GDL +A E WN+MI C PNVVV TCMVDVLC+ MFDQA LI+NM PP
Sbjct: 393 GFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPP 452
Query: 1029 NTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPTVSTYNELLDGLFKEHNLGEASGLV 850
+TFN FIKGLC AGR++WA+ V D+MEKY C P + TYNELLDGLF+ + EA GL+
Sbjct: 453 TVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLI 512
Query: 849 REMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLAKMVVRGIQPDTITFNTIILAYCKQ 670
RE+E+ VEF+ VTYNT++ G F M + LQ L KM+V GI+ DTIT NT + AYCK
Sbjct: 513 RELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKL 572
Query: 669 GKVKSAIDA-NRLMTGYRCHADLITHTSLISGLCEWFTLKEAMTYLFKMLKEGTFPCVAT 493
GKVK+AI + + AD+ITHT ++ G+C W +EA+ YL +MLK G FP +AT
Sbjct: 573 GKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIAT 632
Query: 492 WNVLVRSLFSKMGSLGPTQLLDDIL 418
WNVLVR FSK+G +GP ++LDDI+
Sbjct: 633 WNVLVRGFFSKLGHMGPIRILDDII 657
Score = 170 bits (431), Expect = 8e-40
Identities = 119/418 (28%), Positives = 186/418 (44%), Gaps = 32/418 (7%)
Frame = -2
Query: 1566 GISPNVVTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYEA 1387
G P+V Y +++AL ++ + M G PN+ T+ L+K Q G V A
Sbjct: 139 GCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGA 198
Query: 1386 LDVWKRMLREG------------------------------YEPNVVAYNSLMHGLCSSG 1297
+ M +G +EP V YN+L+HG+C
Sbjct: 199 CKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKEC 258
Query: 1296 KLGMAVSVFNQMKEYGCVPNVTTYSTVIDGFAKTGDLENATEIWNEMITRSCHPNVVVLT 1117
+ A + N+M + G PNV +YSTVI + G++E + ++ M R C PNV T
Sbjct: 259 RFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFT 318
Query: 1116 CMVDVLCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEKY 937
++ A L M PN V +N I GLC+ G +D A+ V+++MEK
Sbjct: 319 SLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKD 378
Query: 936 GCAPTVSTYNELLDGLFKEHNLGEASGLVREMEDGGVEFNLVTYNTVIGGLCFANMVNEA 757
P V+TY+ ++ G K +L A +M + G N+V Y ++ LC +M ++A
Sbjct: 379 SIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQA 438
Query: 756 LQYLAKMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISG 577
+ M+ G P ITFN I C+ G+V+ A++ M Y C ++ T+ L+ G
Sbjct: 439 FDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDG 498
Query: 576 LCEWFTLKEAMTYLFKMLKEG--TFPCVATWNVLVRSLFSKMGSLGPTQLLDDILENG 409
L +EA L + L+E F CV T+N ++ QLL +L NG
Sbjct: 499 LFRANAFREACG-LIRELEERKVEFDCV-TYNTIMYGFSFNGMHQQVLQLLGKMLVNG 554
Score = 161 bits (407), Expect = 5e-37
Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 31/391 (7%)
Frame = -2
Query: 1548 VTYTTIVNALAEFGDVELSLTVLGRMFVSGCSPNMHTFTSLIKGCFQKGSVYE-ALDVWK 1372
+TY T+++ L +++ +L +M + + F +IK C+++ ++ E L ++
Sbjct: 75 LTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIK-CYRRSNLGEQGLKMFY 133
Query: 1371 RMLREGYEPNVVAYNSLMHGLCSSGKLGMAVSVFNQMKEYGCVPNVTTYSTVIDGFAKTG 1192
R+ G EP+V YN ++ L S M +++N MK G PNV TY+ ++ + G
Sbjct: 134 RIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNG 193
Query: 1191 DLENATEIWNEMITRSCHPN------------------------------VVVLTCMVDV 1102
++ A ++ EM + C P+ V V ++
Sbjct: 194 KVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHG 253
Query: 1101 LCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYGCAPT 922
+C+ F +A L+ M PN ++++ I L G ++ ++ VF M GC P
Sbjct: 254 VCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPN 313
Query: 921 VSTYNELLDGLFKEHNLGEASGLVREMEDGGVEFNLVTYNTVIGGLCFANMVNEALQYLA 742
V T+ L+ G F +G+A GL M GV N+V YNT+I GLC ++EA+
Sbjct: 314 VQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWN 373
Query: 741 KMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISGLCEWF 562
+M I+P+ T++TII + K G + SA + M C +++ +T ++ LC+
Sbjct: 374 QMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMS 433
Query: 561 TLKEAMTYLFKMLKEGTFPCVATWNVLVRSL 469
+A + M+ +G P V T+N ++ L
Sbjct: 434 MFDQAFDLIDNMISDGCPPTVITFNNFIKGL 464
Score = 103 bits (256), Expect = 2e-19
Identities = 63/222 (28%), Positives = 111/222 (50%)
Frame = -2
Query: 1113 MVDVLCRNLMFDQAQWLIENMALHKNPPNTVTFNVFIKGLCTAGRLDWAVKVFDEMEKYG 934
M+D L RN D +L++ M L P + F IK + + +K+F + ++G
Sbjct: 80 MIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFG 139
Query: 933 CAPTVSTYNELLDGLFKEHNLGEASGLVREMEDGGVEFNLVTYNTVIGGLCFANMVNEAL 754
C P+V YN +LD L ++ + L M+ G+E N+ TYN ++ LC V+ A
Sbjct: 140 CEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGAC 199
Query: 753 QYLAKMVVRGIQPDTITFNTIILAYCKQGKVKSAIDANRLMTGYRCHADLITHTSLISGL 574
+ L +M +G PD +++ T+I + CK G V A + + + + +LI G+
Sbjct: 200 KLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARE-----LAMKFEPVVPVYNALIHGV 254
Query: 573 CEWFTLKEAMTYLFKMLKEGTFPCVATWNVLVRSLFSKMGSL 448
C+ KEA + +M+ G P V +++ ++ S S MG++
Sbjct: 255 CKECRFKEAFDLMNEMVDRGVDPNVISYSTVI-SCLSDMGNV 295