BLASTX nr result
ID: Coptis25_contig00014076
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00014076
(491 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi... 205 4e-51
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,... 201 5e-50
ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containi... 186 2e-45
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ... 182 2e-44
ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [S... 178 5e-43
>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 205 bits (521), Expect = 4e-51
Identities = 99/151 (65%), Positives = 117/151 (77%)
Frame = -1
Query: 491 RRMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTL 312
R+M+L GI DEFT+TSVLSACAN G HGKQ+H YILRTE + F L VNNAL TL
Sbjct: 280 RKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATL 339
Query: 311 YSKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMI 132
Y KC +VD AR++F+QM +DLVSWNAILSGYVNAGR+ + K F+ +PE+NLLTW VMI
Sbjct: 340 YWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMI 399
Query: 131 SGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
SG AQNG GEE+LKLFN ++ E EPCDY F
Sbjct: 400 SGLAQNGFGEESLKLFNRMKSEGFEPCDYAF 430
Score = 83.2 bits (204), Expect = 2e-14
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Frame = -1
Query: 473 GIMLDEFTFTSVLSACANYGLS-RHGKQLHGYILRTEFKSVAHFVLPVNNALVTLYSKCN 297
G D FTFTSVL A A + +Q+H ++ KS + FV V NAL++++ KC
Sbjct: 144 GFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVV----KSGSGFVTSVLNALLSVFVKCA 199
Query: 296 E---------VDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTW 144
+ AR++FD+M ERD +SW +++GYV G + +Q D + EK ++ W
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259
Query: 143 AVMISGFAQNGLGEEALKLF 84
MISG+ +G EAL++F
Sbjct: 260 NAMISGYVHHGFFLEALEMF 279
Score = 73.9 bits (180), Expect = 1e-11
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Frame = -1
Query: 488 RMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTLY 309
RM EG ++ F + ACA HG+QLH ++R F S L NAL+T+Y
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSS----LSAGNALITMY 472
Query: 308 SKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLL----TWA 141
+KC V+ A +F M D VSWNA+++ G +LF+++ ++++L T+
Sbjct: 473 AKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFL 532
Query: 140 VMISGFAQNGLGEEALKLFNCL 75
++S + GL EE + F +
Sbjct: 533 TVLSTCSHAGLVEEGHRYFKSM 554
>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 574
Score = 201 bits (511), Expect = 5e-50
Identities = 93/151 (61%), Positives = 116/151 (76%)
Frame = -1
Query: 491 RRMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTL 312
R+M+L G+ LDEFT+TS++SACAN G +HGKQ+H YIL+TE F LPVNNALVTL
Sbjct: 282 RKMYLAGLKLDEFTYTSIISACANAGFLQHGKQVHAYILKTEAMPSPDFSLPVNNALVTL 341
Query: 311 YSKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMI 132
Y KC +VD A+ +F+ M RDLVSWN ILSGY+NAGR+ + K F+ +PEKN+L+W VMI
Sbjct: 342 YWKCGKVDEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNILSWVVMI 401
Query: 131 SGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
SG AQNG GEE LKLFN +++ EPCDY F
Sbjct: 402 SGLAQNGFGEEGLKLFNQMKLRGFEPCDYAF 432
Score = 90.9 bits (224), Expect = 1e-16
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Frame = -1
Query: 461 DEFTFTSVLSACANYGLS-RHGKQLHGYILRTEFKSVAHFVLPVNNALVTLYSKCNE--- 294
D FTFTSVL A A + RH +QLH ++ KS FV V NAL+++Y KC
Sbjct: 150 DNFTFTSVLGALALVAENERHCQQLHCTVV----KSGTWFVTSVLNALISVYVKCASSPS 205
Query: 293 ------VDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMI 132
+ ARR+FD+M RD +SW I++GYV + +++FD + EK ++ W MI
Sbjct: 206 VISSSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAMI 265
Query: 131 SGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
SG+ GL +EAL++F + + + ++T+
Sbjct: 266 SGYMHRGLYQEALEMFRKMYLAGLKLDEFTY 296
Score = 74.7 bits (182), Expect = 7e-12
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Frame = -1
Query: 488 RMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTLY 309
+M L G ++ F +++C+ GL HG+QLH ++R F S L NAL+T+Y
Sbjct: 419 QMKLRGFEPCDYAFAGAITSCSMLGLLEHGRQLHAQLVRFGFDSS----LSAGNALITMY 474
Query: 308 SKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFD------VIPEKNLLT 147
++C V+ AR +F M D VSWNA+++ G +LF+ ++P++ +T
Sbjct: 475 ARCGVVEAARTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPDR--IT 532
Query: 146 WAVMISGFAQNGLGEEALKLFNCL 75
+ ++S + GL +E + FN +
Sbjct: 533 FLTVLSACSHAGLVKEGHRYFNSM 556
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/122 (24%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = -1
Query: 398 KQLHGYILRTEFKSVAHFVLPVNNALVTLYSKCNEVDRARRIFDQMLERDLVSWNAILSG 219
+ +H +++ + FK H + N L+ +Y K +++ AR +FD++ + D+V+ +++
Sbjct: 37 RTIHAHMIASGFKPHGHTL----NRLIYIYCKSSKLSYARSLFDEIPQPDIVARTTLINA 92
Query: 218 YVNAGRVGDGKQLFDVIP--EKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDY 45
Y G + K++F P ++ + + MI+ ++ N G A++LF ++ D P ++
Sbjct: 93 YSATGHLKLAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCDMKRNDFRPDNF 152
Query: 44 TF 39
TF
Sbjct: 153 TF 154
>ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 186 bits (472), Expect = 2e-45
Identities = 88/151 (58%), Positives = 114/151 (75%)
Frame = -1
Query: 491 RRMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTL 312
RRMH GI LDE+T+TSV+SA +N GL G+Q+H Y+LRT + HFVL VNNAL+TL
Sbjct: 263 RRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITL 322
Query: 311 YSKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMI 132
Y++C ++ ARR+FD+M +DLVSWNAILSG VNA R+ + +F +P ++LLTW VMI
Sbjct: 323 YTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMI 382
Query: 131 SGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
SG AQNG GEE LKLFN +++E EPCDY +
Sbjct: 383 SGLAQNGFGEEGLKLFNQMKLEGLEPCDYAY 413
Score = 72.0 bits (175), Expect = 5e-11
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Frame = -1
Query: 488 RMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTLY 309
+M LEG+ ++ + +++C+ G +G+QLH I++ S L V NAL+T+Y
Sbjct: 400 QMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSS----LSVGNALITMY 455
Query: 308 SKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLF------DVIPEKNLLT 147
S+C V+ A +F M D VSWNA+++ G QL+ D++P++ +T
Sbjct: 456 SRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDR--IT 513
Query: 146 WAVMISGFAQNGLGEEALKLFNCLRV-------EDH 60
+ ++S + GL +E F+ +RV EDH
Sbjct: 514 FLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDH 549
Score = 58.9 bits (141), Expect = 4e-07
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Frame = -1
Query: 473 GIMLDEFTFTSVLSACANYGLSR-HGKQLHGYILRTEFKSVAHFVLPVNNALVTLYSKCN 297
G + D FTF+SVL A + H +QLH + FK A V V NAL++ Y C
Sbjct: 125 GFVPDPFTFSSVLGALSLIADEETHCQQLHCEV----FKWGALSVPSVLNALMSCYVSCA 180
Query: 296 E---------VDRARRIFDQML--ERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLL 150
+ AR++FD+ RD +W I++GYV + ++L + + + +
Sbjct: 181 SSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAV 240
Query: 149 TWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
W MISG+ G EEA L + + +YT+
Sbjct: 241 AWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTY 277
>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 795
Score = 182 bits (462), Expect = 2e-44
Identities = 87/155 (56%), Positives = 113/155 (72%), Gaps = 4/155 (2%)
Frame = -1
Query: 491 RRMHLEGIMLDEFTFTSVLSACAN----YGLSRHGKQLHGYILRTEFKSVAHFVLPVNNA 324
RRMH GI DE+T+TS++SAC + G+ G+Q+HGYILRT + HFVL VNNA
Sbjct: 272 RRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNA 331
Query: 323 LVTLYSKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTW 144
L+T Y+K + + ARR+FD+M RD++SWNA+LSGYVNA R+ + +F +PE+N+LTW
Sbjct: 332 LITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTW 391
Query: 143 AVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
VMISG AQNG GEE LKLFN ++ E EPCDY F
Sbjct: 392 TVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAF 426
Score = 65.1 bits (157), Expect = 6e-09
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Frame = -1
Query: 488 RMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTLY 309
+M EG+ ++ F ++AC+ G +G+Q+H ++R S L NAL+T+Y
Sbjct: 413 QMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSG----LSAGNALITMY 468
Query: 308 SKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLF------DVIPEKNLLT 147
S+C V+ A +F M D VSWNA+++ G +LF D++P++ +T
Sbjct: 469 SRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDR--IT 526
Query: 146 WAVMISGFAQNGLGEEALKLFN--CLRV-----EDH 60
+ +++ GL +E F+ C R EDH
Sbjct: 527 FLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDH 562
Score = 61.6 bits (148), Expect = 6e-08
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Frame = -1
Query: 488 RMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLP-VNNALVTL 312
+M G + D FTF+SVLSA + ++ H +L E + ++P V NAL++
Sbjct: 129 QMKRYGFLPDPFTFSSVLSALSLIA----DEERHCQMLHCEVIKLGTLLIPSVTNALLSC 184
Query: 311 YSKCNE---------VDRARRIFDQMLERDLV--SWNAILSGYVNAGRVGDGKQLFDVIP 165
Y C + AR++FD+ + + SW +++GYV + ++L D +
Sbjct: 185 YVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLT 244
Query: 164 EKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
+ W MISG+ + GL EEA F + + +YT+
Sbjct: 245 YPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTY 286
Score = 58.5 bits (140), Expect = 5e-07
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Frame = -1
Query: 398 KQLHGYILRTEFKSVAHFVLPVNNALVTLYSKCNEVDRARRIFDQMLERDLVSWNAILSG 219
+ +H +IL + FK F+L N L+ +Y K + + AR++FD++ + D+V+ +LS
Sbjct: 25 RAVHAHILTSGFKPNT-FIL---NRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSA 80
Query: 218 YVNAGRVGDGKQLFDVIP--EKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHEPCDY 45
Y ++G V +QLF+ P ++ +++ MI+ ++ G AL LF ++ P +
Sbjct: 81 YSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPF 140
Query: 44 TF 39
TF
Sbjct: 141 TF 142
>ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein
SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 178 bits (451), Expect = 5e-43
Identities = 87/151 (57%), Positives = 106/151 (70%)
Frame = -1
Query: 491 RRMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTL 312
RRM LE + LDEFTFTSVLSACAN G HGK +HG I R + V LPVNNALVTL
Sbjct: 283 RRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTL 342
Query: 311 YSKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMI 132
YSKC + ARRIFD M +D+VSWN ILSGYV + + ++F+ +P KN L+W VM+
Sbjct: 343 YSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMV 402
Query: 131 SGFAQNGLGEEALKLFNCLRVEDHEPCDYTF 39
SG+ G E+ALKLFN +R ED +PCDYT+
Sbjct: 403 SGYVHGGFSEDALKLFNRMRAEDVKPCDYTY 433
Score = 86.7 bits (213), Expect = 2e-15
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 5/146 (3%)
Frame = -1
Query: 461 DEFTFTSVLSACANY-GLS-RHGKQLHGYILRTEFKSVAHFVLPVNNALVTLYSKCNEVD 288
D+++FT++LSA + +S RH QL +L KS A VL V+NALV LY KC ++
Sbjct: 156 DDYSFTALLSAAGHLPNISVRHCAQLQCSVL----KSGAGGVLSVSNALVALYMKCEALE 211
Query: 287 R---ARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQ 117
AR++ D+M ++D ++W ++ GYV G VG + +F+ + K + W MISG+
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271
Query: 116 NGLGEEALKLFNCLRVEDHEPCDYTF 39
+G+ EA +LF + +E ++TF
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTF 297
Score = 76.3 bits (186), Expect = 2e-12
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Frame = -1
Query: 488 RMHLEGIMLDEFTFTSVLSACANYGLSRHGKQLHGYILRTEFKSVAHFVLPVNNALVTLY 309
RM E + ++T+ +SAC G +HGKQLHG++++ F+ NAL+T+Y
Sbjct: 420 RMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNS----AGNALITMY 475
Query: 308 SKCNEVDRARRIFDQMLERDLVSWNAILSGYVNAGRVGDGKQLFD------VIPEKNLLT 147
++C V A +F M D VSWNA++S G + +LFD + P++ ++
Sbjct: 476 ARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR--IS 533
Query: 146 WAVMISGFAQNGLGEEALKLFNCLR 72
+ +++ +GL +E + F ++
Sbjct: 534 FLTVLTACNHSGLVDEGFQYFESMK 558