BLASTX nr result
ID: Coptis25_contig00014056
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00014056 (467 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus... 81 1e-13 ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12 ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containi... 73 3e-11 emb|CAN79167.1| hypothetical protein VITISV_031236 [Vitis vinifera] 71 8e-11 gb|AAD15382.1| hypothetical protein [Arabidopsis thaliana] 67 2e-09 >ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus communis] gi|223534642|gb|EEF36338.1| multidrug resistance pump, putative [Ricinus communis] Length = 589 Score = 80.9 bits (198), Expect = 1e-13 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 11/133 (8%) Frame = +1 Query: 100 MAFSTHISPSYLLKNSTLFNLFTRTPYFLS-NHNTNRVFLHFLQYPSFFSPNTIFNLPMN 276 M + +PS L + S LF+ FT+ P+F S +N + + FL Y + P + N+ + Sbjct: 1 MLRGSSFAPS-LNRASPLFSFFTKIPFFSSFQNNFHTIRRPFLHYHYYVFPKPVCNIQAS 59 Query: 277 Q----------NHSLSTSVQCATMPMPIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHG 426 + + +LS Q + +S KA+ KA ++SPEGVL K+D CSKHG Sbjct: 60 RFCMERRVQFCSSALSAKPQIHESSALAAKKVSNKAKKKARQESPEGVLRSKIDNCSKHG 119 Query: 427 DLVEALRLYDEAR 465 +LVEALRLYDEAR Sbjct: 120 NLVEALRLYDEAR 132 >ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] Length = 895 Score = 76.6 bits (187), Expect = 2e-12 Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 10/111 (9%) Frame = +1 Query: 163 FTRTPYFLS-NHNTNRVFLHFLQY----PSFFSPNTIFNLPMNQ-----NHSLSTSVQCA 312 F +TP H R LH + P+ +SP + MN+ N +LS + + Sbjct: 329 FAKTPILCHVGHTRLRPLLHGCSHHHFKPTTYSPYIKDRIFMNKSAHFSNLALSATNKYI 388 Query: 313 TMPMPIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHGDLVEALRLYDEAR 465 +TMS KA+ KA R+SPEGVL KLDMCSK GD+VEALRLYDEAR Sbjct: 389 PESSAAAKTMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDEAR 439 >ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] Length = 526 Score = 72.8 bits (177), Expect = 3e-11 Identities = 37/62 (59%), Positives = 44/62 (70%) Frame = +1 Query: 280 NHSLSTSVQCATMPMPIGRTMSKKAQNKAYRQSPEGVLHLKLDMCSKHGDLVEALRLYDE 459 N +LS + + + TMS KA+ KA R+SPEGVL KLDMCSK GD+VEALRLYDE Sbjct: 9 NLALSATNKYIPESSAVAETMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDE 68 Query: 460 AR 465 AR Sbjct: 69 AR 70 >emb|CAN79167.1| hypothetical protein VITISV_031236 [Vitis vinifera] Length = 696 Score = 71.2 bits (173), Expect = 8e-11 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 5/83 (6%) Frame = +1 Query: 232 PSFFSPNTIFNLPMNQN-HSLSTSVQCATMPMP----IGRTMSKKAQNKAYRQSPEGVLH 396 P+ +SP + N++ H L+ ++ +P +TMS K + KA R+SPEGVL Sbjct: 357 PTTYSPYIKDRIFTNKSAHFLNVALSATNKYIPESSAAAKTMSNKTRKKARRESPEGVLR 416 Query: 397 LKLDMCSKHGDLVEALRLYDEAR 465 K DMCSKHGD+VEAL LYDEAR Sbjct: 417 FKTDMCSKHGDVVEALHLYDEAR 439 >gb|AAD15382.1| hypothetical protein [Arabidopsis thaliana] Length = 416 Score = 66.6 bits (161), Expect = 2e-09 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 8/90 (8%) Frame = +1 Query: 220 FLQYPSFFSPNTIFNLPMNQNHSLSTSVQCATMPMPIGR--------TMSKKAQNKAYRQ 375 FL +P F P F LS S+ T+P+ + +S+KA+ KA +Q Sbjct: 15 FLSFP-IFPPERKF---------LSGSIHLCTLPLAAAKQSAASPSENLSRKAKKKAIQQ 64 Query: 376 SPEGVLHLKLDMCSKHGDLVEALRLYDEAR 465 SPE +L KLDMCSK GD++EALRLYDEAR Sbjct: 65 SPEALLKQKLDMCSKKGDVLEALRLYDEAR 94