BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014039
         (792 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO00713.1| retrotransposon protein, putative, unclassified [...   100   5e-19
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...   100   5e-19
gb|EAZ40370.1| hypothetical protein OsJ_24816 [Oryza sativa Japo...    97   4e-18
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...    96   9e-18
ref|XP_002444973.1| hypothetical protein SORBIDRAFT_07g002160 [S...    95   2e-17

>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score =  100 bits (248), Expect = 5e-19
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 13/225 (5%)
 Frame = -2

Query: 704  WKRVHKVAKCISTGLVWSIGKGKDVRAMHQPWLI--LNEKPVILKDLVPMNMELENLIVE 531
            W+ +    + +  G++W IG G+ VR    PWL   L+ +P+  K+   +        V 
Sbjct: 1277 WQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCRIKW------VA 1330

Query: 530  DLMLANESGWDSNRLDQLFPPA-ISLIVKQVVVRPQNGEGDRLRWVGTRNGSLSVKSAY* 354
            DLML N   WD+N+++Q+F P  + +I+K  +      E D + W   + G+ SV++AY 
Sbjct: 1331 DLMLDNGM-WDANKINQIFLPVDVEIILK--LRTSSRDEEDFIAWHPDKLGNFSVRTAYR 1387

Query: 353  MMNEEGWIGQPSSFNCKSI------KAIWRTNTSAANQFFLWKLYMTSLPTGDLIARRGM 192
            +   E W  + +S +   +      + +W+ N  +  + F W+     LPT D   +R +
Sbjct: 1388 LA--ENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNL 1445

Query: 191  EGDFLCPFCWTEQEDPLHIFFKCDWIKNVWF----TSNLKIKIDD 69
            E    C  C  E+ED +H   +C   K++W     +++L +++DD
Sbjct: 1446 EISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDD 1490


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score =  100 bits (248), Expect = 5e-19
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 13/225 (5%)
 Frame = -2

Query: 704  WKRVHKVAKCISTGLVWSIGKGKDVRAMHQPWLI--LNEKPVILKDLVPMNMELENLIVE 531
            W+ +    + +  G++W IG G+ VR    PWL   L+ +P+  K+   +        V 
Sbjct: 1305 WQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCRIKW------VA 1358

Query: 530  DLMLANESGWDSNRLDQLFPPA-ISLIVKQVVVRPQNGEGDRLRWVGTRNGSLSVKSAY* 354
            DLML N   WD+N+++Q+F P  + +I+K  +      E D + W   + G+ SV++AY 
Sbjct: 1359 DLMLDNGM-WDANKINQIFLPVDVEIILK--LRTSSRDEEDFIAWHPDKLGNFSVRTAYR 1415

Query: 353  MMNEEGWIGQPSSFNCKSI------KAIWRTNTSAANQFFLWKLYMTSLPTGDLIARRGM 192
            +   E W  + +S +   +      + +W+ N  +  + F W+     LPT D   +R +
Sbjct: 1416 LA--ENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNL 1473

Query: 191  EGDFLCPFCWTEQEDPLHIFFKCDWIKNVWF----TSNLKIKIDD 69
            E    C  C  E+ED +H   +C   K++W     +++L +++DD
Sbjct: 1474 EISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDD 1518


>gb|EAZ40370.1| hypothetical protein OsJ_24816 [Oryza sativa Japonica Group]
          Length = 613

 Score = 97.1 bits (240), Expect = 4e-18
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 13/226 (5%)
 Frame = -2

Query: 722 PHVSWFWKRVHKVAKCISTGLVWSIGKGKDVRAMHQPWLILN--EKPVILKDLVPMNMEL 549
           P +S+ W+ + +  + +  GL+W +G G D+   + PW+ L   ++P+  +  + +N   
Sbjct: 146 PGISYSWRSIVRGVQVLKVGLIWRVGDGTDIDMWNDPWIPLGTTKRPITPRRGIVLNK-- 203

Query: 548 ENLIVEDLMLANESGWDSNRLDQLFPPAISLIVKQVVVRP-QNGEGDRLRWVGTRNGSLS 372
               V DL+      WD   +  +F       VK ++  P  NG  D   W     G  S
Sbjct: 204 ----VADLINPITGEWDRELIQDIFWEED---VKNILAIPVHNGYSDVAAWHFDPRGIFS 256

Query: 371 VKSAY*MMNEEG------WIGQPSSFNCKSI----KAIWRTNTSAANQFFLWKLYMTSLP 222
           VKSAY  +  +         G+ SS    S     + +WR N     + FLW+L   SLP
Sbjct: 257 VKSAYHTLEYQRDRQAIRQTGESSSGKTSSAALQWEKLWRLNHLPKVKHFLWRLAHNSLP 316

Query: 221 TGDLIARRGMEGDFLCPFCWTEQEDPLHIFFKCDWIKNVWFTSNLK 84
               I++RGME D  CP C    E+  H FFKC ++K  W   N +
Sbjct: 317 LRQNISKRGMEIDTRCPVCLRLDENGGHCFFKCKFVKPCWRMLNFE 362


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score = 95.9 bits (237), Expect = 9e-18
 Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 7/212 (3%)
 Frame = -2

Query: 716 VSWFWKRVHKVAKCISTGLVWSIGKGKDVRAMHQPWLILNEKPVILKDLVPMNMELENLI 537
           +S+ W+ V K    +  GL+W IG G  V     PW+   E   ++    P N  L + +
Sbjct: 11  ISYTWRNVLKGLHLLKEGLIWRIGDGNQVNIWVDPWIPRGETRRVI---TPRNGSLLHKV 67

Query: 536 VEDLMLANESGWDSNRLDQLFPPAISLIVKQVVVRPQNGEGDRLRWVGTRNGSLSVKSAY 357
            E L+      WD   +   F    +  +  + +  Q G  D L W G   G+ SVKSAY
Sbjct: 68  AE-LIDPITGSWDCRLVRDTFLQEDADCILAIPI--QEGMEDTLAWHGDPKGNFSVKSAY 124

Query: 356 *MM-------NEEGWIGQPSSFNCKSIKAIWRTNTSAANQFFLWKLYMTSLPTGDLIARR 198
            +        N        S       K+IW  N +   + FLW+L   S P    IARR
Sbjct: 125 ALASRRRDHHNNADASSSISGRGENVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARR 184

Query: 197 GMEGDFLCPFCWTEQEDPLHIFFKCDWIKNVW 102
           G++ + LCP C+   ED  H+F KC  +K VW
Sbjct: 185 GIKIETLCPMCFRLDEDGGHLFLKCKKVKQVW 216


>ref|XP_002444973.1| hypothetical protein SORBIDRAFT_07g002160 [Sorghum bicolor]
           gi|241941323|gb|EES14468.1| hypothetical protein
           SORBIDRAFT_07g002160 [Sorghum bicolor]
          Length = 469

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
 Frame = -2

Query: 722 PHVSWFWKRVHKVAKCISTGLVWSIGKGKDVRAMHQPWLILNEKPVILKDLVPMNMELEN 543
           P +S+ W+ + +  + +  GL+W +G G  +     PW+    + V  +   P    + N
Sbjct: 67  PGISYAWRSIVRGVQALKDGLIWRVGDGTQINIWTDPWI---PQGVTRRPCTPRGQTILN 123

Query: 542 LIVEDLMLANESGWDSNRLDQLFPPAISLIVKQVVVRPQNGE-GDRLRWVGTRNGSLSVK 366
            + E L+      WD N +  +F  A    VK ++  P   E  D L W     G  SVK
Sbjct: 124 KVSE-LIDPISGEWDRNLVTDIFWEAD---VKNILSIPLKNEMEDTLAWHYDPKGDFSVK 179

Query: 365 SAY*MMNE------EGWIGQPSSFNCKSIK----AIWRTNTSAANQFFLWKLYMTSLPTG 216
           SAY ++ +         IG+ S+            IW+ +     + F W+    SLP  
Sbjct: 180 SAYHVLTDMKELSKRRQIGEASASLISPCNNNWHKIWKLHCPPKVKLFFWRFTHNSLPLR 239

Query: 215 DLIARRGMEGDFLCPFCWTEQEDPLHIFFKCDWIKNVWFTSNL-KIKIDDEPNNTVRDWL 39
             I RRGM+ D  CP CW   ED  H F +C ++K  W   NL ++++     N+ +   
Sbjct: 240 MNILRRGMDIDTRCPVCWRLNEDGGHCFLRCKFVKKCWRALNLEELRLTLIDLNSAKQVA 299

Query: 38  DTLLSWSRNKDL 3
             +LS   +K L
Sbjct: 300 TKILSLEEDKTL 311