BLASTX nr result

ID: Coptis25_contig00014028 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014028
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06616.1| Toc34-2 protein [Elaeis guineensis]                     86   3e-15
gb|AAM65983.1| GTP-binding protein [Arabidopsis thaliana]              80   2e-13
ref|NP_196119.1| translocase of chloroplast 34 [Arabidopsis thal...    80   2e-13
ref|XP_002873181.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyr...    80   2e-13
dbj|BAH20396.1| AT5G05000 [Arabidopsis thaliana]                       80   2e-13

>gb|ACF06616.1| Toc34-2 protein [Elaeis guineensis]
          Length = 312

 Score = 86.3 bits (212), Expect = 3e-15
 Identities = 41/55 (74%), Positives = 44/55 (80%)
 Frame = +3

Query: 3   GPNPNERHKFLIPLILAFQYFFIVKPIQRAIKHDIFKESKPSWELRDVGQAGRRF 167
           GPNPN R K  IPL+LAFQ FF VKPIQ+AIKHD+ KESKP WELRDVG A R F
Sbjct: 258 GPNPNARGKLFIPLLLAFQDFFRVKPIQKAIKHDMAKESKPLWELRDVGLANRNF 312


>gb|AAM65983.1| GTP-binding protein [Arabidopsis thaliana]
          Length = 313

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 36/54 (66%), Positives = 43/54 (79%)
 Frame = +3

Query: 3   GPNPNERHKFLIPLILAFQYFFIVKPIQRAIKHDIFKESKPSWELRDVGQAGRR 164
           GPNPNER K LIPL+ AFQY  ++KP+ RAIK D+ +ESKP+WELRD G A RR
Sbjct: 259 GPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWELRDSGLASRR 312


>ref|NP_196119.1| translocase of chloroplast 34 [Arabidopsis thaliana]
           gi|30680751|ref|NP_850768.1| translocase of chloroplast
           34 [Arabidopsis thaliana] gi|42573271|ref|NP_974732.1|
           translocase of chloroplast 34 [Arabidopsis thaliana]
           gi|166897637|sp|Q38906.2|TOC34_ARATH RecName:
           Full=Translocase of chloroplast 34, chloroplastic;
           Short=AtToc34; AltName: Full=34 kDa chloroplast outer
           envelope protein; AltName: Full=GTP-binding protein
           OEP34; AltName: Full=Plastid protein import 3
           gi|10178039|dbj|BAB11522.1| GTP-binding protein
           [Arabidopsis thaliana] gi|110738722|dbj|BAF01285.1|
           GTP-binding protein [Arabidopsis thaliana]
           gi|199589346|gb|ACH90464.1| At5g05000 [Arabidopsis
           thaliana] gi|332003431|gb|AED90814.1| translocase of
           chloroplast 34 [Arabidopsis thaliana]
           gi|332003432|gb|AED90815.1| translocase of chloroplast
           34 [Arabidopsis thaliana] gi|332003433|gb|AED90816.1|
           translocase of chloroplast 34 [Arabidopsis thaliana]
          Length = 313

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 36/54 (66%), Positives = 43/54 (79%)
 Frame = +3

Query: 3   GPNPNERHKFLIPLILAFQYFFIVKPIQRAIKHDIFKESKPSWELRDVGQAGRR 164
           GPNPNER K LIPL+ AFQY  ++KP+ RAIK D+ +ESKP+WELRD G A RR
Sbjct: 259 GPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWELRDSGLASRR 312


>ref|XP_002873181.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata]
           gi|297319018|gb|EFH49440.1| ATTOC34/OEP34 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 313

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 36/54 (66%), Positives = 43/54 (79%)
 Frame = +3

Query: 3   GPNPNERHKFLIPLILAFQYFFIVKPIQRAIKHDIFKESKPSWELRDVGQAGRR 164
           GPNPN+R K LIPLI AFQY  ++KP+ RAIK D+ +ESKP+WELRD G A RR
Sbjct: 259 GPNPNQRGKRLIPLIFAFQYLLVMKPLVRAIKSDVTRESKPAWELRDSGLASRR 312


>dbj|BAH20396.1| AT5G05000 [Arabidopsis thaliana]
          Length = 246

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 36/54 (66%), Positives = 43/54 (79%)
 Frame = +3

Query: 3   GPNPNERHKFLIPLILAFQYFFIVKPIQRAIKHDIFKESKPSWELRDVGQAGRR 164
           GPNPNER K LIPL+ AFQY  ++KP+ RAIK D+ +ESKP+WELRD G A RR
Sbjct: 192 GPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKPAWELRDSGLASRR 245


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