BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00014022
         (1370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267854.2| PREDICTED: splicing factor U2af large subuni...    89   2e-15
ref|XP_003578657.1| PREDICTED: splicing factor U2af large subuni...    89   3e-15
sp|Q2QKB3.1|U2A2A_WHEAT RecName: Full=Splicing factor U2af large...    88   6e-15
ref|NP_974695.1| Splicing factor U2af large subunit A [Arabidops...    88   6e-15
ref|XP_002271463.2| PREDICTED: splicing factor U2af large subuni...    88   6e-15

>ref|XP_002267854.2| PREDICTED: splicing factor U2af large subunit B-like, partial [Vitis
            vinifera]
          Length = 410

 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 50/94 (53%), Positives = 64/94 (68%), Gaps = 6/94 (6%)
 Frame = +2

Query: 887  TSQVTRHARRVYVEGFSSV-NPQTIETFFNDSITS----SCNSG-IVCDVYVDKEKKFAI 1048
            T Q TRHARRVYV G   + N QTI TFF+  +T+    S   G  V +VY++ EKKFA 
Sbjct: 99   TQQATRHARRVYVGGLPPLANEQTIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 158

Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150
            VEMRS + AS A+ L+G +FEG  +++RRPTDYN
Sbjct: 159  VEMRSVEEASNAMALDGIMFEGVSVRVRRPTDYN 192


>ref|XP_003578657.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
            distachyon]
          Length = 534

 Score = 88.6 bits (218), Expect = 3e-15
 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
 Frame = +2

Query: 848  LSGDQQTMLKTNGTSQVTRHARRVYVEGFS-SVNPQTIETFFNDSITSSCNSGI-----V 1009
            ++G  Q M     T Q TRHARRVYV G   S N QT+  +FN  + +   +       V
Sbjct: 183  IAGQPQAM-----TQQATRHARRVYVGGLPPSANEQTVAIYFNHVMAAIGGNAAGLGDAV 237

Query: 1010 CDVYVDKEKKFAIVEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150
             +VY++ +KKFA VEMRS + AS A+ L+G LFEGA +K+RRPTDYN
Sbjct: 238  VNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYN 284


>sp|Q2QKB3.1|U2A2A_WHEAT RecName: Full=Splicing factor U2af large subunit A; AltName: Full=U2
            auxiliary factor 65 kDa subunit A; AltName: Full=U2 small
            nuclear ribonucleoprotein auxiliary factor large subunit
            A; Short=U2 snRNP auxiliary factor large subunit A
            gi|68036924|gb|AAY84881.1| U2AF large subunit [Triticum
            aestivum]
          Length = 591

 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
 Frame = +2

Query: 887  TSQVTRHARRVYVEGFSSV-NPQTIETFFNDSITSSCNSGI-----VCDVYVDKEKKFAI 1048
            T Q TRHARRVYV G   + N QT+  FFN  + +   +       V +VY++ +KKFA 
Sbjct: 264  TQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAF 323

Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150
            VEMRS + AS A+ L+G +FEGA +K+RRPTDYN
Sbjct: 324  VEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYN 357


>ref|NP_974695.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
            gi|332661288|gb|AEE86688.1| Splicing factor U2af large
            subunit A [Arabidopsis thaliana]
          Length = 565

 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 6/94 (6%)
 Frame = +2

Query: 887  TSQVTRHARRVYVEGFS-SVNPQTIETFFNDSITSSCNS-----GIVCDVYVDKEKKFAI 1048
            T Q TRHARRVYV G S + N Q++ TFF+  + +   +       V +VY++ EKKFA 
Sbjct: 231  TQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAF 290

Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150
            VEMRS + AS A+ L+G +FEGA +K+RRP+DYN
Sbjct: 291  VEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYN 324


>ref|XP_002271463.2| PREDICTED: splicing factor U2af large subunit B-like [Vitis vinifera]
          Length = 568

 Score = 87.8 bits (216), Expect = 6e-15
 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 6/94 (6%)
 Frame = +2

Query: 887  TSQVTRHARRVYVEGFS-SVNPQTIETFFNDSITSSCNS-----GIVCDVYVDKEKKFAI 1048
            T Q TRHARRVYV G S + N Q++ TFF+  +++   +       V +VY++ EKKFA 
Sbjct: 226  TQQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAF 285

Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150
            VEMRS + AS A+ L+G +FEGA +K+RRP+DYN
Sbjct: 286  VEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYN 319