BLASTX nr result
ID: Coptis25_contig00014022
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00014022 (1370 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002267854.2| PREDICTED: splicing factor U2af large subuni... 89 2e-15 ref|XP_003578657.1| PREDICTED: splicing factor U2af large subuni... 89 3e-15 sp|Q2QKB3.1|U2A2A_WHEAT RecName: Full=Splicing factor U2af large... 88 6e-15 ref|NP_974695.1| Splicing factor U2af large subunit A [Arabidops... 88 6e-15 ref|XP_002271463.2| PREDICTED: splicing factor U2af large subuni... 88 6e-15 >ref|XP_002267854.2| PREDICTED: splicing factor U2af large subunit B-like, partial [Vitis vinifera] Length = 410 Score = 89.4 bits (220), Expect = 2e-15 Identities = 50/94 (53%), Positives = 64/94 (68%), Gaps = 6/94 (6%) Frame = +2 Query: 887 TSQVTRHARRVYVEGFSSV-NPQTIETFFNDSITS----SCNSG-IVCDVYVDKEKKFAI 1048 T Q TRHARRVYV G + N QTI TFF+ +T+ S G V +VY++ EKKFA Sbjct: 99 TQQATRHARRVYVGGLPPLANEQTIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 158 Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150 VEMRS + AS A+ L+G +FEG +++RRPTDYN Sbjct: 159 VEMRSVEEASNAMALDGIMFEGVSVRVRRPTDYN 192 >ref|XP_003578657.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium distachyon] Length = 534 Score = 88.6 bits (218), Expect = 3e-15 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 6/107 (5%) Frame = +2 Query: 848 LSGDQQTMLKTNGTSQVTRHARRVYVEGFS-SVNPQTIETFFNDSITSSCNSGI-----V 1009 ++G Q M T Q TRHARRVYV G S N QT+ +FN + + + V Sbjct: 183 IAGQPQAM-----TQQATRHARRVYVGGLPPSANEQTVAIYFNHVMAAIGGNAAGLGDAV 237 Query: 1010 CDVYVDKEKKFAIVEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150 +VY++ +KKFA VEMRS + AS A+ L+G LFEGA +K+RRPTDYN Sbjct: 238 VNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYN 284 >sp|Q2QKB3.1|U2A2A_WHEAT RecName: Full=Splicing factor U2af large subunit A; AltName: Full=U2 auxiliary factor 65 kDa subunit A; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit A; Short=U2 snRNP auxiliary factor large subunit A gi|68036924|gb|AAY84881.1| U2AF large subunit [Triticum aestivum] Length = 591 Score = 87.8 bits (216), Expect = 6e-15 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 6/94 (6%) Frame = +2 Query: 887 TSQVTRHARRVYVEGFSSV-NPQTIETFFNDSITSSCNSGI-----VCDVYVDKEKKFAI 1048 T Q TRHARRVYV G + N QT+ FFN + + + V +VY++ +KKFA Sbjct: 264 TQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAF 323 Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150 VEMRS + AS A+ L+G +FEGA +K+RRPTDYN Sbjct: 324 VEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYN 357 >ref|NP_974695.1| Splicing factor U2af large subunit A [Arabidopsis thaliana] gi|332661288|gb|AEE86688.1| Splicing factor U2af large subunit A [Arabidopsis thaliana] Length = 565 Score = 87.8 bits (216), Expect = 6e-15 Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 6/94 (6%) Frame = +2 Query: 887 TSQVTRHARRVYVEGFS-SVNPQTIETFFNDSITSSCNS-----GIVCDVYVDKEKKFAI 1048 T Q TRHARRVYV G S + N Q++ TFF+ + + + V +VY++ EKKFA Sbjct: 231 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAF 290 Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150 VEMRS + AS A+ L+G +FEGA +K+RRP+DYN Sbjct: 291 VEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYN 324 >ref|XP_002271463.2| PREDICTED: splicing factor U2af large subunit B-like [Vitis vinifera] Length = 568 Score = 87.8 bits (216), Expect = 6e-15 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 6/94 (6%) Frame = +2 Query: 887 TSQVTRHARRVYVEGFS-SVNPQTIETFFNDSITSSCNS-----GIVCDVYVDKEKKFAI 1048 T Q TRHARRVYV G S + N Q++ TFF+ +++ + V +VY++ EKKFA Sbjct: 226 TQQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAF 285 Query: 1049 VEMRSEQAASCALELNGSLFEGAELKIRRPTDYN 1150 VEMRS + AS A+ L+G +FEGA +K+RRP+DYN Sbjct: 286 VEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYN 319