BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013970
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    81   1e-13
gb|ABD28498.2| Polynucleotidyl transferase, Ribonuclease H fold ...    80   2e-13
gb|EAZ40370.1| hypothetical protein OsJ_24816 [Oryza sativa Japo...    76   3e-12
gb|ABN07997.1| contains similarity to reverse trancriptase , rel...    74   1e-11
ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [S...    73   2e-11

>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
 Frame = -3

Query: 508  SWFWQGMQAVHKTIVKENAMWQVGSGKDIDIWKDSWIPDVLHGKVPITTINNPLYSKVAD 329
            S+ W+ + +  K ++KE  +W++G+G ++ IW+D W+ D L G+  IT+  +   + V++
Sbjct: 909  SYSWRSIWS-SKALLKEGMVWRIGNGTNVRIWEDPWVLDEL-GRF-ITSEKHGNLNMVSE 965

Query: 328  LIDVNTSSWNIGILNSIF---DINTSLSIQNIYIPRNNPVDKLHWTLTKNGKHSVKSAYQ 158
            LID +   W + ++ ++F   DI   LSI    +P     D+L W  TKN  +SVK+AY 
Sbjct: 966  LIDFDRMEWKVSLIETVFNERDIKCILSIPLSSLPLK---DELTWAFTKNAHYSVKTAY- 1021

Query: 157  QLSLRYVTNVNHKTSLAFWRKDLRPRETLFAWKCYHSIIPTRDHL 23
             L      +  H+  +  W  ++ P+   F W+   + +P R  L
Sbjct: 1022 MLGKGGNLDSFHQAWIDIWSMEVSPKVKHFLWRLGTNTLPVRSLL 1066


>gb|ABD28498.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 424

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
 Frame = -3

Query: 508 SWFWQGMQAVHKTIVKENAMWQVGSGKDIDIWKDSWIPDVLHGKVPITTINNPLYS--KV 335
           S+ W+G+  V K +V+ +  W +G+G+ I +W   W+ +  H ++   T  + ++S  +V
Sbjct: 80  SYVWRGLWRV-KDMVRRSFQWSIGTGESISVWHQLWLGN--HEQLTPVTELHSMWSELRV 136

Query: 334 ADLIDVNTSSWNIGILNSIFDINTSLSIQNIYIPRNNPVDKLHWTLTKNGKHSVKSAYQQ 155
           A+L+ VN   WN   +N +FD  T+  I    +  +   D   W   K+G +S++SAY  
Sbjct: 137 ANLLQVNAKQWNKSFINYVFDTGTAEQIYKTPLLPSVQQDIATWRFEKDGNYSIRSAYCD 196

Query: 154 LSLRYVTNVNHKTS---LAFWRKDLRPRETLFAWKCYHSIIPTRDHLST 17
           +         H+ +    + W   L P+   F W+   + +PTR  L +
Sbjct: 197 ILNNNTALNQHRVNGSWNSIWNLKLPPKVKNFMWRACRNCLPTRVKLQS 245


>gb|EAZ40370.1| hypothetical protein OsJ_24816 [Oryza sativa Japonica Group]
          Length = 613

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
 Frame = -3

Query: 469 IVKENAMWQVGSGKDIDIWKDSWIPDVLHGKVPITTINNPLYSKVADLIDVNTSSWNIGI 290
           ++K   +W+VG G DID+W D WIP +   K PIT     + +KVADLI+  T  W+  +
Sbjct: 161 VLKVGLIWRVGDGTDIDMWNDPWIP-LGTTKRPITPRRGIVLNKVADLINPITGEWDREL 219

Query: 289 LNSIF---DINTSLSIQNIYIPRNNPVDKLHWTLTKNGKHSVKSAYQQL-------SLRY 140
           +  IF   D+   L+I       N   D   W     G  SVKSAY  L       ++R 
Sbjct: 220 IQDIFWEEDVKNILAIP----VHNGYSDVAAWHFDPRGIFSVKSAYHTLEYQRDRQAIRQ 275

Query: 139 V-TNVNHKTSLA------FWRKDLRPRETLFAWKCYHSIIPTRDHLS 20
              + + KTS A       WR +  P+   F W+  H+ +P R ++S
Sbjct: 276 TGESSSGKTSSAALQWEKLWRLNHLPKVKHFLWRLAHNSLPLRQNIS 322


>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
           truncatula]
          Length = 407

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
 Frame = -3

Query: 508 SWFWQGMQAVHKTIVKENAMWQVGSGKDIDIWKDSWIPDVLHGKVPITTINNPLYSKVAD 329
           S+ W+ +Q     ++ + + W++G G  I+IW+D+W+P     KV  T   N   ++V D
Sbjct: 185 SYAWKSIQNAI-WVISKGSCWRIGDGGSINIWEDNWVPTYKGLKVMTTKGPNHFVNRVKD 243

Query: 328 LIDVNTSSWNIGILNSIFDINTSLSIQNIYIPRNNPVDKLHWTLTKNGKHSVKSAYQQLS 149
           LI+   S WN  IL   F       I +I +      D L W     G +SVKS Y  L 
Sbjct: 244 LINNQESLWNKVILEDQFISINIDQISHIPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLR 303

Query: 148 LRYVTNVNHKTSLA--------FWRKDLRPRETLFAWKCYHSIIPTRDHL 23
                 +N+ ++ +         W     PR  +  W+  +  +P R  L
Sbjct: 304 TWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILNDSLPVRSSL 353


>ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [Sorghum bicolor]
           gi|241922442|gb|EER95586.1| hypothetical protein
           SORBIDRAFT_01g048580 [Sorghum bicolor]
          Length = 517

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
 Frame = -3

Query: 469 IVKENAMWQVGSGKDIDIWKDSWIPDVLHGKVPITTINNPLYSKVADLIDVNTSSWNIGI 290
           ++KE  +W++GSG +++IW D WIP     K PIT     L +KV+DLI+ +T +W+  +
Sbjct: 341 LLKEGIIWRIGSGSNVNIWTDPWIPRGTTRK-PITPRGRYLITKVSDLINPSTGTWDENL 399

Query: 289 LNSIF---DINTSLSIQNIYIPRNNPVDKLHWTLTKNGKHSVKSAYQ-QLSLR-YVTNVN 125
           ++ +F   D    L I   Y      VD   W     G  SVKSAY+  + +R +    +
Sbjct: 400 ISDVFWPEDAEAILMIPTDY----EAVDWPAWHYDSKGVFSVKSAYKLAVQIRDHQKGTD 455

Query: 124 HKTSLA------------FWRKDLRPRETLFAWKCYHSIIPTRDHL 23
             TS+A             W+ ++  +  +F W   H+ +P R ++
Sbjct: 456 ASTSMAENQNTYGFRWGKLWQLNIPNKIKMFLWHFAHNTLPLRRNI 501