BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013969
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago t...    67   4e-14
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    65   2e-13
gb|EEC76774.1| hypothetical protein OsI_14862 [Oryza sativa Indi...    65   3e-13
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    65   3e-13
gb|EAZ29765.1| hypothetical protein OsJ_13823 [Oryza sativa Japo...    65   3e-13

>gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago truncatula]
          Length = 405

 Score = 67.0 bits (162), Expect(2) = 4e-14
 Identities = 29/58 (50%), Positives = 42/58 (72%)
 Frame = +3

Query: 6   RGLRQGDPLSPLLFILCMEVLTRILNVKTQNNKLHGIKILRNSSPIFHLLFADDAFIF 179
           RGLRQGDPLSP LFIL +E L+ +++ +     +HG+K+ R +  + HLLFAD+ F+F
Sbjct: 19  RGLRQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKVCRGAPVVSHLLFADNCFLF 76



 Score = 35.4 bits (80), Expect(2) = 4e-14
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +1

Query: 178 FCRANIDEATELLDALNLFCEITGQEINFEKS 273
           FCRAN+ EA  LL  L  +   +GQEIN  KS
Sbjct: 76  FCRANVVEAQRLLTILKTYEAASGQEINLSKS 107


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 65.1 bits (157), Expect(2) = 2e-13
 Identities = 32/58 (55%), Positives = 38/58 (65%)
 Frame = +3

Query: 6   RGLRQGDPLSPLLFILCMEVLTRILNVKTQNNKLHGIKILRNSSPIFHLLFADDAFIF 179
           RGLRQGDPLSP LFILC EVL   +    + N + GIK+   S  + HLLFADD+  F
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFF 472



 Score = 35.0 bits (79), Expect(2) = 2e-13
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 175 FFCRANIDEATELLDALNLFCEITGQEINFEKS 273
           FFC+AN ++   +L+ L  +  ++GQ+INF KS
Sbjct: 471 FFCKANKEQCGIILEILKQYESVSGQQINFSKS 503


>gb|EEC76774.1| hypothetical protein OsI_14862 [Oryza sativa Indica Group]
          Length = 1860

 Score = 64.7 bits (156), Expect(2) = 3e-13
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = +3

Query: 6    RGLRQGDPLSPLLFILCMEVLTRILNVKTQNNKLHGIKILRNSSPIFHLLFADDAFIFLS 185
            RGLRQGDP+SP LF+LC E L+ IL  K     + GI+  R   PI HLLFADD+  F  
Sbjct: 1405 RGLRQGDPISPYLFLLCTEGLSSILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFAR 1464

Query: 186  S 188
            S
Sbjct: 1465 S 1465



 Score = 34.7 bits (78), Expect(2) = 3e-13
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 175  FFCRANIDEATELLDALNLFCEITGQEINFEKS 273
            FF R+++     L DAL  +C+ +GQ+IN +KS
Sbjct: 1461 FFARSDLHSVQGLKDALQAYCKASGQKINLQKS 1493


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 64.7 bits (156), Expect(2) = 3e-13
 Identities = 28/58 (48%), Positives = 39/58 (67%)
 Frame = +3

Query: 6   RGLRQGDPLSPLLFILCMEVLTRILNVKTQNNKLHGIKILRNSSPIFHLLFADDAFIF 179
           RG+RQGDP+SP L++LC E L+ ++    +  +LHG K  RN   I HLLFA D+ +F
Sbjct: 86  RGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVF 143



 Score = 34.7 bits (78), Expect(2) = 3e-13
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +1

Query: 178 FCRANIDEATELLDALNLFCEITGQEINFEKS 273
           FC+A ++E   L++ L L+ + +GQ +NF+KS
Sbjct: 143 FCKATLEECMTLVNVLKLYEKASGQAVNFQKS 174


>gb|EAZ29765.1| hypothetical protein OsJ_13823 [Oryza sativa Japonica Group]
          Length = 490

 Score = 64.7 bits (156), Expect(2) = 3e-13
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = +3

Query: 6   RGLRQGDPLSPLLFILCMEVLTRILNVKTQNNKLHGIKILRNSSPIFHLLFADDAFIFLS 185
           RGLRQGDP+SP LF+LC E L+ IL  K     + GI+  R   PI HLLFADD+  F  
Sbjct: 118 RGLRQGDPISPYLFLLCTEGLSSILQKKESMGVIQGIRNGRLGPPISHLLFADDSIFFAR 177

Query: 186 S 188
           S
Sbjct: 178 S 178



 Score = 34.7 bits (78), Expect(2) = 3e-13
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 175 FFCRANIDEATELLDALNLFCEITGQEINFEKS 273
           FF R+++     L DAL  +C+ +GQ+IN +KS
Sbjct: 174 FFARSDLHSVQGLKDALQAYCKASGQKINLQKS 206